PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0315781

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 400aa MW: 44873.4 Da PI: 6.5833

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0315781	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.6e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ RcHm_v2.0_Chr1g0315781 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 89**6666.***********5 PP
2	zf-CCCH	22.8	1.6e-07	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C +G+rC++ H+ RcHm_v2.0_Chr1g0315781 34 ICTFYQK-GACAFGSRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	19.7	1.5e-06	144	166	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg RcHm_v2.0_Chr1g0315781 144 RAICS-FAAAGNCPRGENCPHIHG 166 78999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MAKRVLCKFF AHGACLKGEH CEFSHDWKDP SNNICTFYQK GACAFGSRCR YEHVKGSRAQ 60 SSGSSSSANS HQSLAFDSAL AHPSRTASSG VALVPGTLSE LSAFSSPFLP PPKPAWSDSL 120 DDGDFDHNED DDVGETRSAR PADRAICSFA AAGNCPRGEN CPHIHGDICP SCGKHCLHPY 180 RPVEREEHMR TCEEKHKQLE ALKRSQEIEC SVCLERVLSK PTVAERKFGI LSECDHPFCI 240 SCIRNWRSSS PTSGMDVNSA LRACPICRKL SYFVIPSVIW YNTKEEKEEI VDSYKARLSS 300 IDCKHFDFGN GNCPFGTSCF YKHTVKPGSY VWKFHRPPPR RPPPRRSDTV RMDALYEMFE 360 HLEELEDYTP GDLDIPLEVQ LLLMQLGLYP SDSSDDELNY

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MAKRVLCKFF AHGACLKGEH CEFSHDWKDP SNNICTFYQK GACAFGSRCR YEHVKGSRAQ  60
SSGSSSSANS HQSLAFDSAL AHPSRTASSG VALVPGTLSE LSAFSSPFLP PPKPAWSDSL  120
DDGDFDHNED DDVGETRSAR PADRAICSFA AAGNCPRGEN CPHIHGDICP SCGKHCLHPY  180
RPVEREEHMR TCEEKHKQLE ALKRSQEIEC SVCLERVLSK PTVAERKFGI LSECDHPFCI  240
SCIRNWRSSS PTSGMDVNSA LRACPICRKL SYFVIPSVIW YNTKEEKEEI VDSYKARLSS  300
IDCKHFDFGN GNCPFGTSCF YKHTVKPGSY VWKFHRPPPR RPPPRRSDTV RMDALYEMFE  360
HLEELEDYTP GDLDIPLEVQ LLLMQLGLYP SDSSDDELNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-131	C3H family protein