PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr0c22g0500511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 116aa MW: 13299.9 Da PI: 10.7821 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.8 | 1.2e-27 | 9 | 58 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien+ rqvtfskRr+g+lKKA+EL +LCdaev vi+fs+tgkl+e+ss RcHm_v2.0_Chr0c22g0500511 9 KIENTNSRQVTFSKRRAGLLKKAQELAILCDAEVVVIVFSNTGKLFEFSS 58 69**********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence |
MKKKMGRGKI ENTNSRQVTF SKRRAGLLKK AQELAILCDA EVVVIVFSNT GKLFEFSSAG 60 SIFLLFFNFG LSFLNFLRFM HVFLIMFTLF IIIFLLSLVE IIWGFDLNFS MSASHL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 2e-26 | MIKC_MADS family protein |