PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023929826.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 170aa MW: 19414.9 Da PI: 5.9912

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023929826.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.4	1e-37	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C+kdCvlapyfp ++ ++f +vhk+FGasn++k+l++lp + r a++++ +eA r++dPvyG+v++i++lq+q+ ++++el+ XP_023929826.1 6 RCAACKSLRRRCPKDCVLAPYFPPTNLQRFSCVHKIFGASNITKMLEQLPVHLRAVAADCMSFEASSRMEDPVYGSVRIISQLQEQIIEAQSELE 100 6********************************************************************************************** PP DUF260 96 llkee 100 ++k e XP_023929826.1 101 KTKGE 105 99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MSHSSRCAAC KSLRRRCPKD CVLAPYFPPT NLQRFSCVHK IFGASNITKM LEQLPVHLRA 60 VAADCMSFEA SSRMEDPVYG SVRIISQLQE QIIEAQSELE KTKGEIAFHN AQQQLQQQQT 120 QQLQMIQAIA QEGEDQHSWL SSSQQDPFPN VNQQLLEDYN YSNTFLGFEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	8e-44	LBD family protein