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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_023929196.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 275aa MW: 31356.4 Da PI: 7.0042 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 57.8 | 1.9e-18 | 77 | 129 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k
XP_023929196.1 77 KKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 129
556899**********************************************9 PP
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| 2 | HD-ZIP_I/II | 129.5 | 1.3e-41 | 75 | 165 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekk+rls eqvk+LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lk++++alk++n++L++++++L++el
XP_023929196.1 75 EKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKADNDNLQSQNKKLTAEL 165
69**************************************************************************************998 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 275 aa Download sequence |
MAFPPSQGFM FQTHEDQDHL PPSNTFPSCP PQHYHGAVPF LMKRSMSFSG VDNNKCEEVV 60 HGDDELSDDG SQLGEKKKRL SLEQVKALEK SFEIGNKLEP ERKMQLAKAL GLQPRQIAIW 120 FQNRRARWKT KQLEKDYEVL KKQFEALKAD NDNLQSQNKK LTAELLALKN RDKNEVGVKC 180 IKKEAEGSWS NGSENSCDIN LDISRTPVMN SPVSSQLSSH HLFPSSLRPT SMTQLLQGSS 240 RPDLQSLKID HMAQDESFCN MFTGIEDQHN FWPWP |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 124 | 132 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G01220.1 | 2e-86 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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