PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023928534.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 406aa MW: 46164.1 Da PI: 4.8894

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023928534.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.8e-12	197	248	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_023928534.1 197 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 248 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MEKEDNYSTP PLPPSFMGLD YSLDHQQQQQ QFMKQRIGKT SGDNNSTGMV DYLLNNPSQH 60 QQQQMASGFC GSSSFDKLNF ADVMQFADFG PKLALNQTKI SEEESAIDPV YFLKFPVLND 120 RLEDQSLMVP HNEERFQGVS VEDETRVRED EEARVSDNTS VQLQFIGEDL QKNSVPETKN 180 KRKRPRTIKT SEEVESQRMT HIAVERNRRK QMNEHLRVLR SLMPGSYVQR GDQASIIGGA 240 IEFVRELEQL LQCLESQKRR RLYGETPRPV GADSSLAIQQ PQPPLFPPMP LPNDEFKIVD 300 LETGLQEETA ENKSCLADVE VKLLGFDAMI KILSRRRPGQ LIKAIAALED LQLNILHTNI 360 TTIEQTVLYS FNVKVASESR FTAEDIASSV QQIFSFIHQT VPCDVI

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MEKEDNYSTP PLPPSFMGLD YSLDHQQQQQ QFMKQRIGKT SGDNNSTGMV DYLLNNPSQH  60
QQQQMASGFC GSSSFDKLNF ADVMQFADFG PKLALNQTKI SEEESAIDPV YFLKFPVLND  120
RLEDQSLMVP HNEERFQGVS VEDETRVRED EEARVSDNTS VQLQFIGEDL QKNSVPETKN  180
KRKRPRTIKT SEEVESQRMT HIAVERNRRK QMNEHLRVLR SLMPGSYVQR GDQASIIGGA  240
IEFVRELEQL LQCLESQKRR RLYGETPRPV GADSSLAIQQ PQPPLFPPMP LPNDEFKIVD  300
LETGLQEETA ENKSCLADVE VKLLGFDAMI KILSRRRPGQ LIKAIAALED LQLNILHTNI  360
TTIEQTVLYS FNVKVASESR FTAEDIASSV QQIFSFIHQT VPCDVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	209	RMTHIAVERNRR
2	258	262	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-138	bHLH family protein