PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023928434.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 466aa MW: 50682.7 Da PI: 8.1841

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023928434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.4e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H XP_023928434.1 69 YICEVCHKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	11.6	0.00085	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k++ +s+ k H + + XP_023928434.1 145 WKCDRCSKRYAVQSDWKAHTKIC 167 58*****************9987 PP
3	zf-C2H2	10.6	0.0018	175	193	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + XP_023928434.1 175 DCGTIFSRKDSFVTHRAFC 193 9**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MSNFALELGD DEQLQSSILT HTSTENEKGG DGSTTSTILK KKRNLPGHPD PDAEVVALSP 60 RTLMTTNRYI CEVCHKGFQR DQNLQLHRRG HNLPWKLKQR PNSQVKRRVY VCPEPNCVHH 120 DPSRALGDLT GIKKHFCRKH GEKKWKCDRC SKRYAVQSDW KAHTKICGTR EYHCDCGTIF 180 SRKDSFVTHR AFCDALTEEN YKANQNISNT GGMLQNHAQE LIISSMPSSD SCSNTNTAMN 240 SSISNENIGN SLKPVSLNSA GAMISGNIDP NFNPRTPGTC FITGGGSNAF PMAIGSCYTS 300 ATALLQKAAE MGAKISDNSI VPILLRGSTG YSTATGSMNL SGCVQDSSSV VGNMGPITMT 360 NSGSLLEDQV TNDKTLDTGK QRPNYTVSQS GLLPSTLSMH SENGHAGDLL RQVHIGGGEK 420 MTVDFLGVEP AGNLSVGRKR SYDSNVMGLE YSNAQQSMHS RNSELD

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MSNFALELGD DEQLQSSILT HTSTENEKGG DGSTTSTILK KKRNLPGHPD PDAEVVALSP  60
RTLMTTNRYI CEVCHKGFQR DQNLQLHRRG HNLPWKLKQR PNSQVKRRVY VCPEPNCVHH  120
DPSRALGDLT GIKKHFCRKH GEKKWKCDRC SKRYAVQSDW KAHTKICGTR EYHCDCGTIF  180
SRKDSFVTHR AFCDALTEEN YKANQNISNT GGMLQNHAQE LIISSMPSSD SCSNTNTAMN  240
SSISNENIGN SLKPVSLNSA GAMISGNIDP NFNPRTPGTC FITGGGSNAF PMAIGSCYTS  300
ATALLQKAAE MGAKISDNSI VPILLRGSTG YSTATGSMNL SGCVQDSSSV VGNMGPITMT  360
NSGSLLEDQV TNDKTLDTGK QRPNYTVSQS GLLPSTLSMH SENGHAGDLL RQVHIGGGEK  420
MTVDFLGVEP AGNLSVGRKR SYDSNVMGLE YSNAQQSMHS RNSELD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	C2H2 family protein