PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023928416.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24061.3 Da    PI: 8.8624
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023928416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.83.5e-29958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien+++rqv+f+kRrng+lKKA ELSvLCdaeva++ifss+g+lyey+
  XP_023928416.1  9 KRIENNTKRQVSFCKRRNGLLKKACELSVLCDAEVALLIFSSRGRLYEYA 58
                    79***********************************************8 PP
2K-box55.52.4e-1980170494
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     ss  +++++ +e++qqe+akL+  i+n+q ++RhllGe+++sL+ ++ +qLe+++ ++l ki+skK   l ++  +lq k  e+++ ++a 
  XP_023928416.1  80 SSIAETNTQVNEYYQQESAKLRLLIQNMQDSKRHLLGEEVSSLNSRDQEQLENKIVQGLIKIKSKKVMELENENAYLQAKVAEVERLEQAN 170
                     444447778899*********************************************************************9999887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MGRRKIEIKR IENNTKRQVS FCKRRNGLLK KACELSVLCD AEVALLIFSS RGRLYEYANN  60
STKSTIERYK NACLDSSETS SIAETNTQVN EYYQQESAKL RLLIQNMQDS KRHLLGEEVS  120
SLNSRDQEQL ENKIVQGLIK IKSKKVMELE NENAYLQAKV AEVERLEQAN SNMSVLDLNA  180
FQALSLNSFT PIAVEGSTSY SQREQNILRL G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.24e-76MIKC_MADS family protein