PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023928352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | ARR-B | ||||||||
Protein Properties | Length: 687aa MW: 73819.1 Da PI: 6.8696 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.7 | 5.2e-28 | 246 | 299 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl XP_023928352.1 246 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 299 79*******************.********************************8 PP | |||||||
2 | Myb_DNA-binding | 40.4 | 6.6e-13 | 248 | 298 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++qk++ XP_023928352.1 248 RVVWSVELHQQFVSAVNQLGLDkaVPKRILELMNvPGLTRENVASHLQKFR 298 678**********************************************97 PP | |||||||
3 | Response_reg | 79.5 | 1.1e-26 | 62 | 170 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+ + +++l+q+l++ +y +v+++++++ al+ll+e++ +D++l D+ mp+mdG++ll+ e++lp+i+++a g + + + ++ G XP_023928352.1 62 VLVVDDDVTCLRILEQMLRRCRY-QVTTCSQATVALNLLRERKgcFDVVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIRHG 154 89*********************.****************************************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_023928352.1 155 ACDYLIKPIREEELKN 170 *************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 687 aa Download sequence |
MAAMQRVVAA AQSSASTSGG GGGGGGATSY ASSKGVAASG ASGTAATELV VISDQFPVGL 60 RVLVVDDDVT CLRILEQMLR RCRYQVTTCS QATVALNLLR ERKGCFDVVL SDVHMPDMDG 120 FKLLELVGLE MDLPVIMMSA DGRTSAVMRG IRHGACDYLI KPIREEELKN IWQHVVRKKW 180 NENKEVEHSG SVEENDRHKR GNDDSEYASS ANEGTDGILK AQKKRSNVKD EDDGELENDD 240 PSTSKKPRVV WSVELHQQFV SAVNQLGLDK AVPKRILELM NVPGLTRENV ASHLQKFRLY 300 LKRLSGVAQQ QSGVSNTMCG PVDPNVKLGS LGRFDIQALA ASGQIPPQTL AALHAELLGR 360 PTANLIPGMD QPTLLQASVQ GPKRIPIEHG VAFGQPLVKC PSNVSKHFPQ SVISSVEDVS 420 SGFGVWPSNN LNTVVPSSNL SGLSTQNSNM LMDILQQQQR QQQQSQQQSM PPEPSRTINV 480 QPSCLVVPSQ SASFQAGNSP ASVSQNCSFN RNSVIDYSLL SSQSNNSLVN IGHFSNGDLK 540 TTGALSGYSG PGSISPSVSS CSGNADTSMG RRVQSSTITF GNARQPGFVH NMHDIQGSYG 600 SKTGEVLDQG PLQNLGFVGK GTCIPSRFAV DEFESPMSNM SHGKLFMENN GIRVKQEPSV 660 GFMDNTKVGI PVLQQFSSND IMSVFTE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-118 | ARR-B family protein |