PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023927762.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 556aa    MW: 62445.8 Da    PI: 6.4598
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023927762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.15.5e-921865552374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ve Ll+++++++s++l+laq +L+rl+++ ++p g+p+qR+a+yf eA ++ l++   ++    +++ +s+++ ++++  +k+fs +sPi+ fsh
  XP_023927762.1 186 VEELLRAVDCFDSNQLQLAQGILERLNQRhRAPVGKPLQRAAFYFREAFQSLLTN---GT--NRTTRLSSWSEIVQTIRTYKAFSGISPIPLFSH 275
                     678*************************999***********************9...33..345566667789********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.........ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                     +t+Nqa+lea+eg++ +H++Dfdi+ G+Q++++++++++R+e+         +  lRiT+++++e   + e + ++e+L++fA+el+++++ +++
  XP_023927762.1 276 FTTNQALLEAFEGSTFLHVVDFDIGLGGQYASFMKEISERAESckgsnnnipSVFLRITAIVPEE--YALESRLIKENLSQFAQELKIRLQVDLI 368
                     *****************************************44445566654559********66..99999*********************** PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleak 274
                     + +++e+l+++++++ +gE++a  l+  ++r l ++ +    + ++L+ ++++sP+vvv+v++e  ++ +s+sF + f+++le+y+ +++sl+a+
  XP_023927762.1 369 HLRTFESLSFKAIKFMNGEKTAFLLSPTIFRRLGSTNN----IAAFLSDLRTVSPNVVVLVDNEgwTESGSASFRRNFVNSLEFYALMLESLDAS 459
                     *********************************55555....555*******************6566699************************ PP

            GRAS 275 lpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                     ++      ++ +k+E +ll+++i  +v ++g++       ++ W++ +  aG+kpv+ls++a  qa+lll kv+++g++v +++++lvl+W+drp
  XP_023927762.1 460 VGGGGvagDWVRKIEMVLLRPRILAAVEAAGRR-------AAPWKDVFYGAGMKPVQLSQFADFQAELLLGKVQVRGFQVGKRHAELVLCWRDRP 547
                     9988777899*********************98.......89***************************************************** PP

            GRAS 367 LvsvSaWr 374
                     +v++SaW+
  XP_023927762.1 548 MVATSAWK 555
                     *******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    
MRVPANSPQT NNQSPNPKPV LSNNTSRNIG FHSPTNTPSS LCYEPTSVLD LRRSPSPIKE  60
KPASTAEIPG RLDVLSRPED PLDWDEQVLH NLDWDSIIRD IDLLHNEDPV PSLRTILQSN  120
PCDPHQVVQL PELPHPQPFD PTQFVHTDFI CDVNYSTQNL ADLHSSNTFD LTHEFHHTSL  180
NGFETVEELL RAVDCFDSNQ LQLAQGILER LNQRHRAPVG KPLQRAAFYF REAFQSLLTN  240
GTNRTTRLSS WSEIVQTIRT YKAFSGISPI PLFSHFTTNQ ALLEAFEGST FLHVVDFDIG  300
LGGQYASFMK EISERAESCK GSNNNIPSVF LRITAIVPEE YALESRLIKE NLSQFAQELK  360
IRLQVDLIHL RTFESLSFKA IKFMNGEKTA FLLSPTIFRR LGSTNNIAAF LSDLRTVSPN  420
VVVLVDNEGW TESGSASFRR NFVNSLEFYA LMLESLDASV GGGGVAGDWV RKIEMVLLRP  480
RILAAVEAAG RRAAPWKDVF YGAGMKPVQL SQFADFQAEL LLGKVQVRGF QVGKRHAELV  540
LCWRDRPMVA TSAWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-141GRAS family protein