PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023927549.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 537aa    MW: 60534.2 Da    PI: 6.7345
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023927549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-0785106426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C f++  G+C+ GdrC+F+Hg
  XP_023927549.1  85 APCYFYFN-GFCNKGDRCSFMHG 106
                     69******.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    
MDEELQKRNT DCVYFLASPL TCKKGADCEY RHSEIARLNP RDCWYWLSGD CVNPTCAFRH  60
PPLDGHAGVP SESAQCSAPV NKTNAPCYFY FNGFCNKGDR CSFMHGSDGN ASTGKSTKTA  120
SASTDAPFVE KKISAGNETQ LAQTETHLNP SESVPKVAIN LNSEFKEGLE EPVPNNVSQQ  180
RASPQIAVCG YDEAPVIRSE SLLIADGFIQ SRSHYEADQS SEEQVEDDIE PEERWESSPG  240
FDVLVGDKSE NLGYDDDAEY LLDLDREQRE LSSHFLGYDF EDPVKYDPTH PDLKHYERDI  300
DDGYDPDDKH LFNNVRIDPG HSRDSMLDSI LFRKRKHVPM ELTVGDHNGM DLRDHLRRRR  360
VIDGCPITGL SRRCGSSRLI GRSQERPHRH GMGQHLHGRM ASEVGMSTIE SVKNGTFSHG  420
ATANQRGLLR RSQRHRSKKV SRKKILSKHP FSSEVTRKPV TRERRSTQES TTFTGPKTLA  480
QIKEEKKKAE ENGVCIWKVG HASRTTSTDF QAPKPLSEIL KDKRKLDFVR DSDNSGY