PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023927395.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 315aa    MW: 35515.9 Da    PI: 5.4312
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023927395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-152370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
   XP_023927395.1 23 KGLWSPEEDEKLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 70
                     678*******************************************97 PP
2Myb_DNA-binding53.36.4e-1776120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E+el++++++ lG++ W+ Ia++++ gRt++++k++w++ 
   XP_023927395.1  76 RGAFSPQEEELIIHLHAILGNR-WSQIAARLP-GRTDNEIKNFWNST 120
                      89********************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MRKPDQMGKE RMNSANNKSK LRKGLWSPEE DEKLMRYMLT NGQGCWSDIA RNAGLQRCGK  60
SCRLRWINYL RPDLKRGAFS PQEEELIIHL HAILGNRWSQ IAARLPGRTD NEIKNFWNST  120
LKKRFKNNTF STSTNDSDSS EPRDVIGVTP LNEHDIMNMC MDTFSSSSNS MQTLVTAGGH  180
LDPFSMLDNC YDMTGAAGLF NVPTSLTPQV GKGDGFYGDY GILGPNIMGL ERDLSLPPLE  240
SRSIEENNAM VDMKSTNNHF NNNGCFNNTS ESFKVENMFG FGNHGQGENL KMGEWDFEGL  300
MQDLSSFPFL DFPVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-84MYB family protein