PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023927381.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

NF-YA

Protein Properties

Length: 342aa MW: 37385.9 Da PI: 9.7543

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023927381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101	1.2e-31	171	227	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e +kk +k rkpylheSRh hA+rR+Rg+gGrF XP_023927381.1 171 EEPVFVNAKQYHGILRRRQSRAKAELQKKA-IKVRKPYLHESRHLHAMRRARGCGGRF 227 69*************************9.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MMPAKLGNED RRLENCGPTA LHSTVYSHPL WSGVGSNGPL GESGSKSSSM EHLNGSVKNG 60 VIQLKANGQL DGGANFNKET QVTVASQSDG NIGQEHQHVN HVPSSTPKMG EHLDPNSNME 120 LVGHSIVLTP YMYSDPHYGG MLAPYGHQAM IPAQLYGMHQ ARMPLPLEME EEPVFVNAKQ 180 YHGILRRRQS RAKAELQKKA IKVRKPYLHE SRHLHAMRRA RGCGGRFLNT KKLDNDANPT 240 SEKGMNMGAN SSVQPTSKSG SEYLPNNGNG KLDSSHNKQE GSRSMIHNMH KAHNLSNGNS 300 NGHGLSSTYH SLFSDDKEGG YMGQQRESMH MNGIARGALP IK

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MMPAKLGNED RRLENCGPTA LHSTVYSHPL WSGVGSNGPL GESGSKSSSM EHLNGSVKNG  60
VIQLKANGQL DGGANFNKET QVTVASQSDG NIGQEHQHVN HVPSSTPKMG EHLDPNSNME  120
LVGHSIVLTP YMYSDPHYGG MLAPYGHQAM IPAQLYGMHQ ARMPLPLEME EEPVFVNAKQ  180
YHGILRRRQS RAKAELQKKA IKVRKPYLHE SRHLHAMRRA RGCGGRFLNT KKLDNDANPT  240
SEKGMNMGAN SSVQPTSKSG SEYLPNNGNG KLDSSHNKQE GSRSMIHNMH KAHNLSNGNS  300
NGHGLSSTYH SLFSDDKEGG YMGQQRESMH MNGIARGALP IK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.1	2e-42	NF-YA family protein