PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023927169.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 519aa MW: 57332.2 Da PI: 9.3737

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023927169.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	65	85	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_023927169.1 65 CEICNKGFQRDQNLQLHRRGH 85 *******************88 PP
2	zf-C2H2	11.8	0.00073	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_023927169.1 139 WKCEKCSKKYAVQSDWKAHSKIC 161 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MMSEDGIPVP STVGGFVQEL NSNPNPNPNS IPLKRKRSLP GTPDPDAEVI ALSPKSLMAT 60 NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEVR KKVYVCPEKS CVHHDPSRAL 120 GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRKDSF 180 ITHRAFCDAL AEENARFTSV SAVNQNFKHD LINGTISNPQ LPGIPQLPSA FHPEFAGSES 240 VNNLIPDGQK PKLPLWLDNA AQLRQIGITN NSNAYLASLP ELVPNASMSN MFGSTSQMQW 300 LNKYPEASFT SADLTISSLP RVLKEEQENK GNLSESGVTL YPNNNQNQQT GPGHMSATAL 360 LQKAAQIGST RSNPSFNGTA FGLMSTSHSH VSNSRNEVQK IFRQQNQAGN MNELLNSFPS 420 STPNTTVGDG SMLVNSNSSS FLQNTKNLEH WLMSNNGKHD QHVPAGKHHS SSNEVERSLT 480 RDFLGVGGDA SRPFLQQELA NFASMGSAMD LSHYTSGHH

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MMSEDGIPVP STVGGFVQEL NSNPNPNPNS IPLKRKRSLP GTPDPDAEVI ALSPKSLMAT  60
NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEVR KKVYVCPEKS CVHHDPSRAL  120
GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRKDSF  180
ITHRAFCDAL AEENARFTSV SAVNQNFKHD LINGTISNPQ LPGIPQLPSA FHPEFAGSES  240
VNNLIPDGQK PKLPLWLDNA AQLRQIGITN NSNAYLASLP ELVPNASMSN MFGSTSQMQW  300
LNKYPEASFT SADLTISSLP RVLKEEQENK GNLSESGVTL YPNNNQNQQT GPGHMSATAL  360
LQKAAQIGST RSNPSFNGTA FGLMSTSHSH VSNSRNEVQK IFRQQNQAGN MNELLNSFPS  420
STPNTTVGDG SMLVNSNSSS FLQNTKNLEH WLMSNNGKHD QHVPAGKHHS SSNEVERSLT  480
RDFLGVGGDA SRPFLQQELA NFASMGSAMD LSHYTSGHH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	102	KLKQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-102	C2H2 family protein