PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023926994.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 441aa MW: 49105 Da PI: 8.8927

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023926994.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_023926994.1 54 YVCEICNQGFQRDQNLQMHRRRH 76 9*********************9 PP
2	zf-C2H2	16.1	3.3e-05	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_023926994.1 131 WVCEKCSKGYAVQSDYKAHLKTC 153 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MLANNSSSSS LPSSEPFSCL ENGINNKRKR RPAGTPDAEV VSLSPKTLLE SDRYVCEICN 60 QGFQRDQNLQ MHRRRHKVPW KLLKRENPVV RKRVFVCPEP SCLHHDPCHA LGDLVGIKKH 120 FRRKHSNHKQ WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS 180 MGRLRPESHT LQPACLSRTA SSPSPSSETN FSTGPWPAAL VMSKQKPTET TFLNPTTITA 240 GDNSSKNTSY HNLELQLSTT SNPIDVSASP KTEEANHSTQ LQLSIGSSEF GERNESNLSN 300 IRNSPKEGTI TSDKAGVVAS RLKEQARDQL RLARAEKTYA EEARQQAKRQ IELAEQEFAN 360 AKRIRQQAQS ELDKAQTLKD HAVKQINSTI LQITCHACKQ QFQARTAVVP PPDENSLVLS 420 YMSSAITTEG EVENENGTAK T

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MLANNSSSSS LPSSEPFSCL ENGINNKRKR RPAGTPDAEV VSLSPKTLLE SDRYVCEICN  60
QGFQRDQNLQ MHRRRHKVPW KLLKRENPVV RKRVFVCPEP SCLHHDPCHA LGDLVGIKKH  120
FRRKHSNHKQ WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS  180
MGRLRPESHT LQPACLSRTA SSPSPSSETN FSTGPWPAAL VMSKQKPTET TFLNPTTITA  240
GDNSSKNTSY HNLELQLSTT SNPIDVSASP KTEEANHSTQ LQLSIGSSEF GERNESNLSN  300
IRNSPKEGTI TSDKAGVVAS RLKEQARDQL RLARAEKTYA EEARQQAKRQ IELAEQEFAN  360
AKRIRQQAQS ELDKAQTLKD HAVKQINSTI LQITCHACKQ QFQARTAVVP PPDENSLVLS  420
YMSSAITTEG EVENENGTAK T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-149	C2H2 family protein