PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023926986.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 443aa MW: 49317.2 Da PI: 8.7883

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023926986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.2e-06	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_023926986.1 56 YVCEICNQGFQRDQNLQMHRRRH 78 9*********************9 PP
2	zf-C2H2	16.1	3.3e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_023926986.1 133 WVCEKCSKGYAVQSDYKAHLKTC 155 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MLANNSSSSS LPSSEPFSCL ENGINNKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI 60 CNQGFQRDQN LQMHRRRHKV PWKLLKRENP VVRKRVFVCP EPSCLHHDPC HALGDLVGIK 120 KHFRRKHSNH KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA 180 CSMGRLRPES HTLQPACLSR TASSPSPSSE TNFSTGPWPA ALVMSKQKPT ETTFLNPTTI 240 TAGDNSSKNT SYHNLELQLS TTSNPIDVSA SPKTEEANHS TQLQLSIGSS EFGERNESNL 300 SNIRNSPKEG TITSDKAGVV ASRLKEQARD QLRLARAEKT YAEEARQQAK RQIELAEQEF 360 ANAKRIRQQA QSELDKAQTL KDHAVKQINS TILQITCHAC KQQFQARTAV VPPPDENSLV 420 LSYMSSAITT EGEVENENGT AKT

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MLANNSSSSS LPSSEPFSCL ENGINNKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI  60
CNQGFQRDQN LQMHRRRHKV PWKLLKRENP VVRKRVFVCP EPSCLHHDPC HALGDLVGIK  120
KHFRRKHSNH KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA  180
CSMGRLRPES HTLQPACLSR TASSPSPSSE TNFSTGPWPA ALVMSKQKPT ETTFLNPTTI  240
TAGDNSSKNT SYHNLELQLS TTSNPIDVSA SPKTEEANHS TQLQLSIGSS EFGERNESNL  300
SNIRNSPKEG TITSDKAGVV ASRLKEQARD QLRLARAEKT YAEEARQQAK RQIELAEQEF  360
ANAKRIRQQA QSELDKAQTL KDHAVKQINS TILQITCHAC KQQFQARTAV VPPPDENSLV  420
LSYMSSAITT EGEVENENGT AKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-153	C2H2 family protein