PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023926843.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92149.9 Da    PI: 6.3464
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023926843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-182683457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_023926843.1 26 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                    5789****************************************************97 PP
2START154.77.6e-491643712204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s++++g a+ra+g+v  +++   +e+l+d++ W + +++ e+      g  g+++l 
  XP_023926843.1 164 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCNGVAARACGLVSLEPT-KIAEILKDRPSWFRECRSLEVFTMFPAGngGTIELV 257
                     7899******************************************************.7777777777***********999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    +++vRae+lp g+li+p+++g+s +++v+h +l++++++++lr+l+
  XP_023926843.1 258 YTQTYAPTTLAPaRDFWTLRYTTSLDNGSLVVCERSLSGSGAGPNaaaAAQFVRAEMLPCGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLY 352
                     **************************************99999998999********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++ a+l++ +
  XP_023926843.1 353 ESSKVVAQKMTIAALRYIR 371
                     **************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MAMAVAQQHR ESSSGSISRH LDAGKYVRYT AEQVEALERV YSECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TTSAATTDAS CDSVVTTPQH SLRDANNPAG LLSIAEETLA EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISQSCNGVAA RACGLVSLEP TKIAEILKDR PSWFRECRSL  240
EVFTMFPAGN GGTIELVYTQ TYAPTTLAPA RDFWTLRYTT SLDNGSLVVC ERSLSGSGAG  300
PNAAAAAQFV RAEMLPCGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVVAQ  360
KMTIAALRYI RQIAQETSGE VVYGLGRQPA VLRTFSQRLS RGFNDAVNGF NDDGWSLINS  420
DGAEDVIIAV NSTKNLSATS NPANSLSLVG GILCAKASML LQNVPPAVLV RFLREHRSEW  480
ADFNVDAYSA ASLKAGSYAY PGMRPTRFTG SQIIMPLGHT IEHEELLEVI RLEGHSLPQE  540
DAFASRDIHL LQICSGVDEN AVGACSELVF APIDEMFPDD APLLPSGFRI IPLDSKTSDA  600
KDSLSTHRTL DLTSSLEVGP ATNHAAGDVS SCHYSRSVLT IAFQFPFDSS LQDNVATMAR  660
QYVRSVISSV QRVAMAISPT GLSPAMGPKL SPGSPEALTL AHWICQSYSY HIGADLLRSD  720
SLGGDSVLKH LWNHQDAILC CSLKTVPVFI FANQTGLDML ETTLVALQDI TLDKIFDESG  780
RKALCADFAK LMQQGFTYLP GGICMSTMGR HVSYEQAIAW KVLAADETTV HCLAFSFVNW  840
SFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein