PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023926522.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 606aa MW: 67699.1 Da PI: 6.9014

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023926522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.7e-07	315	336	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC f +G C++Gd+C+F H+ XP_023926522.1 315 LCFKFVSSGSCPRGDKCNFQHD 336 66666678*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MAPPRILLCG DVLGRLNQLF KRVSSVNKAA GPFDALICVG QFFPDSPEQL GELTDYIEGR 60 SQVPLPTYFI GDYGIGAAKH LLSASKDSAN LGFKMDGLKV CQNLFWLKGS GKFNLHGLSV 120 AYLSGRHFSD GQQFGTYTQD DVDALRAIAE DPGIFDLFLT NEWPSGVTNR ASTSDLPHGF 180 LDSPGSDSTI AELVAEIKPR YHIAGTKGIF YAREPYSNVD AVHVTRFLGL ASVANKEKQK 240 FIHAISPTPA STMSAVEIST KPLNTTLSPY TYADQTVLAK EATKRPSDSD ADSQYWRYDV 300 SQKRQKYGAG DGDRLCFKFV SSGSCPRGDK CNFQHDENAR EQSLRGVCFD FLNKGRCERG 360 PNCNFKHSLQ DEGESYSHKK RGSENASNRS RECWFCLSSP NIESHLIVSI GEYFYCALAK 420 GPLVQDHILI IPVEHLPNTV LLPPETEIEL GRFQNSLKSY YKNQGKSVVF FEWVSKRSTH 480 ANLQAIPVPS SRAAAVQDIF NLAAEKLGFK FVASRKNENS DGRKVLRTQF DKNFSFFYVE 540 LPDGTIFSHL VEENERFPAQ FGREVLAGLL NMADRADWRN CSQSKEEETK MAEDFKNQFQ 600 EFDPNK

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MAPPRILLCG DVLGRLNQLF KRVSSVNKAA GPFDALICVG QFFPDSPEQL GELTDYIEGR  60
SQVPLPTYFI GDYGIGAAKH LLSASKDSAN LGFKMDGLKV CQNLFWLKGS GKFNLHGLSV  120
AYLSGRHFSD GQQFGTYTQD DVDALRAIAE DPGIFDLFLT NEWPSGVTNR ASTSDLPHGF  180
LDSPGSDSTI AELVAEIKPR YHIAGTKGIF YAREPYSNVD AVHVTRFLGL ASVANKEKQK  240
FIHAISPTPA STMSAVEIST KPLNTTLSPY TYADQTVLAK EATKRPSDSD ADSQYWRYDV  300
SQKRQKYGAG DGDRLCFKFV SSGSCPRGDK CNFQHDENAR EQSLRGVCFD FLNKGRCERG  360
PNCNFKHSLQ DEGESYSHKK RGSENASNRS RECWFCLSSP NIESHLIVSI GEYFYCALAK  420
GPLVQDHILI IPVEHLPNTV LLPPETEIEL GRFQNSLKSY YKNQGKSVVF FEWVSKRSTH  480
ANLQAIPVPS SRAAAVQDIF NLAAEKLGFK FVASRKNENS DGRKVLRTQF DKNFSFFYVE  540
LPDGTIFSHL VEENERFPAQ FGREVLAGLL NMADRADWRN CSQSKEEETK MAEDFKNQFQ  600
EFDPNK