PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023925213.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 713aa MW: 78115.3 Da PI: 7.1343

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023925213.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.2	3.1e-23	123	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + + XP_023925213.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGVTWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 213 89**************************996555555..89*******************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_023925213.1 214 NGDLCVGIRRA 224 8999**997 PP
2	Auxin_resp	115.1	6.2e-38	300	383	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk+ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ XP_023925213.1 300 AATLAANGQPFEVVYYPRASTPEFCVKAGMVKAAFQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 383 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence
MITFMDSKEK LKEVDKCLDP QLWHACAGGM VQMPSVSAKV FYFPQGHAEH AYGAVDFRSC 60 PGGLPPYVLC RVSAIKFMAD PDTDEVFAKI RLVPVSGNDR EFDDNGIGGG MNGSEPQEKP 120 ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTILAKDVHG VTWKFRHIYR 180 GTPRRHLLTT GWSTFVNHKK LVAGDSIVFL RAENGDLCVG IRRAKRGIGG GPESASGWNP 240 AGGNCGVPYG GFSAFLRDDE SKLMRNGGNG SSIGIGNGNG NGNGGVMGKG KVRAESVIEA 300 ATLAANGQPF EVVYYPRAST PEFCVKAGMV KAAFQIRWCS GMRFKMAFET EDSSRISWFM 360 GTISSVQVAD PIRWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVANMP TMHLPFSPPR 420 KKLRMPQHPE FPLDGQLQLQ TFSGNLLGPN NPFSCLPDNT PAGMQGARHA HYGLSLSDLH 480 LNKLQSSLFP AGFPPLDHAS TPPRAQNISM FQKPSMSENA SNVSCLLTMA HSTQTSKKRD 540 DVKTPQFVLF GQPILTEQQI SLSCSGDTVS PVRTGNSSSD GNADKLTYFS DGSGSALHQQ 600 GIPERLSCEG FQWYKDNRQE NDPNLDTGHC KVFMESEDVG RSLDLSLLGS YEELHRKLAD 660 MFGIENSEAL NHVLYRDVTG AVKHIGDEPF SDFMKTARRL TILMDSSSDN VRK

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence

MITFMDSKEK LKEVDKCLDP QLWHACAGGM VQMPSVSAKV FYFPQGHAEH AYGAVDFRSC  60
PGGLPPYVLC RVSAIKFMAD PDTDEVFAKI RLVPVSGNDR EFDDNGIGGG MNGSEPQEKP  120
ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTILAKDVHG VTWKFRHIYR  180
GTPRRHLLTT GWSTFVNHKK LVAGDSIVFL RAENGDLCVG IRRAKRGIGG GPESASGWNP  240
AGGNCGVPYG GFSAFLRDDE SKLMRNGGNG SSIGIGNGNG NGNGGVMGKG KVRAESVIEA  300
ATLAANGQPF EVVYYPRAST PEFCVKAGMV KAAFQIRWCS GMRFKMAFET EDSSRISWFM  360
GTISSVQVAD PIRWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVANMP TMHLPFSPPR  420
KKLRMPQHPE FPLDGQLQLQ TFSGNLLGPN NPFSCLPDNT PAGMQGARHA HYGLSLSDLH  480
LNKLQSSLFP AGFPPLDHAS TPPRAQNISM FQKPSMSENA SNVSCLLTMA HSTQTSKKRD  540
DVKTPQFVLF GQPILTEQQI SLSCSGDTVS PVRTGNSSSD GNADKLTYFS DGSGSALHQQ  600
GIPERLSCEG FQWYKDNRQE NDPNLDTGHC KVFMESEDVG RSLDLSLLGS YEELHRKLAD  660
MFGIENSEAL NHVLYRDVTG AVKHIGDEPF SDFMKTARRL TILMDSSSDN VRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	425	PRKKLRM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein