PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023924731.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 630aa MW: 68041.3 Da PI: 6.9541

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023924731.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	291	311	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+++++GtC + + C+FaH+ XP_023924731.1 291 VCRYWLASGTCAR-ADCRFAHD 311 5**********.*****7 PP
2	zf-CCCH	17.9	5.6e-06	317	337	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++ G C G++C F+H+p XP_023924731.1 317 CKYWLQ-GNCLAGSSCVFSHDP 337 ****.***********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence
MVSERLYELC RPILENEGLG DEDKTDQLEE LLSAPPSSLK GKALEDAVLG ALWQYRASLD 60 KNTGSSPPAR GATVIRTRSP APWMQRSVSY GSSSGSPRPS STAPFAPPGL PSAFNPLMRT 120 KSSTASPFGS PRASPHLPVA TPVIPHSPRL SSYQFSDVSP TTENYGDYGS DTVDWLVNDD 180 ASSSTSFGDS GFNTSTEFMS PYTSEMSPYD MLRSILQDTK TDEELEQVLE ANGYDLSQTI 240 NSLMEGQMMG ANTMAAAMQD QHQQRTFLVG KSMSPSSRPV TPAGQQKSPI VCRYWLASGT 300 CARADCRFAH DVQSHVCKYW LQGNCLAGSS CVFSHDPAAL MQQLGISNDG STGSQQYGPS 360 FALSDYDSFP ALQPTTSNPY EDDGSGLDPA TLNAVLQQSQ SFVQPPPGLF PTFVPTGPRV 420 GSRPNSRPGS RHASRAPTPS QPNFQDDEAF PTLGSAAAAR PGKRHHGKRG GHGHHNNAPP 480 QPSSLADVVR MSPSPGPNSK EAMRRGLRNN RSFTSTLENS SIAMAIAAPV NIPWLETGSG 540 ANAAYMKARQ EAFKHGGLRN KFLQSAAQAW NRNDARGAKA LSLRGQNENN LMREKHREAA 600 QALYEERNKD SSDSSRSKEL YVDLHGLHPE

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence

MVSERLYELC RPILENEGLG DEDKTDQLEE LLSAPPSSLK GKALEDAVLG ALWQYRASLD  60
KNTGSSPPAR GATVIRTRSP APWMQRSVSY GSSSGSPRPS STAPFAPPGL PSAFNPLMRT  120
KSSTASPFGS PRASPHLPVA TPVIPHSPRL SSYQFSDVSP TTENYGDYGS DTVDWLVNDD  180
ASSSTSFGDS GFNTSTEFMS PYTSEMSPYD MLRSILQDTK TDEELEQVLE ANGYDLSQTI  240
NSLMEGQMMG ANTMAAAMQD QHQQRTFLVG KSMSPSSRPV TPAGQQKSPI VCRYWLASGT  300
CARADCRFAH DVQSHVCKYW LQGNCLAGSS CVFSHDPAAL MQQLGISNDG STGSQQYGPS  360
FALSDYDSFP ALQPTTSNPY EDDGSGLDPA TLNAVLQQSQ SFVQPPPGLF PTFVPTGPRV  420
GSRPNSRPGS RHASRAPTPS QPNFQDDEAF PTLGSAAAAR PGKRHHGKRG GHGHHNNAPP  480
QPSSLADVVR MSPSPGPNSK EAMRRGLRNN RSFTSTLENS SIAMAIAAPV NIPWLETGSG  540
ANAAYMKARQ EAFKHGGLRN KFLQSAAQAW NRNDARGAKA LSLRGQNENN LMREKHREAA  600
QALYEERNKD SSDSSRSKEL YVDLHGLHPE