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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_023924473.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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| Family | HB-other | ||||||||
| Protein Properties | Length: 1206aa MW: 135246 Da PI: 7.5909 | ||||||||
| Description | HB-other family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 39 | 1.3e-12 | 5 | 54 | 8 | 57 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
t++ql+ L++l+ +n+yp++e +e+ A+ lgLt +qV+ WF rR ++k+
XP_023924473.1 5 TASQLQSLQQLYLENKYPTKELMEDNAAALGLTYKQVRGWFIERRRRDKR 54
899*********************************************97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1206 aa Download sequence |
MARKTASQLQ SLQQLYLENK YPTKELMEDN AAALGLTYKQ VRGWFIERRR RDKRENGSIV 60 PSHSASSKKN PILTTTGTIA ARKVLKGDPL LHKAKASFSS IANRPSTVET RIPKRKRKPI 120 LLQHLLTSDY ILKKVFRKEG PPLGVEFDSL PSRAFCYRTD PKNSHPSCQD NQGAGKRLKV 180 SEQAILSHQV SNKKRAPAKK HGIGKGLMAP GKKHGIGKGL MAPGKKHGIG KGLMTQAKKH 240 GIGKGLMTVW RATNPDGGEI PTGIDYTDRE VVVSTAPKKP QHRVKRSQQA PVAVSLRNKS 300 QDRRKQSTRR REVEHNQDEH LKQPDIVKCE LALEGAISRD YLNHVAMFVD DEELELQELQ 360 AGPNPLRCSD HFAANGIHGC SLCKDLLAKF PPNSVKMKHP FCTQPWDSSP EIVKKLFKVF 420 HFLYTYAVAV DICSFTLDEF AQSFHDKDSL LLGKIHVALL KLLISEVEAE LSNGYFPPHL 480 SISCNFLALL HSAENQKVAL EFWKRALNPL TWTEILRQVL VAAGFGSKQG AMRREALNKE 540 MNLMVKYGLR PGTLKCELFK ILSEQGNNGL KVSELAKSLP IAELNIASTT EELEPLICSS 600 LSSDITLFEK ISSSSYRLRI SSVAKEVDEF QSDTEDSGSV DDDPNDCGPC SDSDDSGCES 660 GNSNSRNFKY MNHHKSQNNM LIVHNEIDES HPGEVWLLGL MEGEYSDLSI EEKLNALVAI 720 TDLLLAGSSF RVEDPTQAIA ECTPNIHHYG SGAKLKRSSA KQHSIDRPSW GYAGQMHSIQ 780 EAYSLFKFHP VDSSVSISKS YEKERSSGEG ENVKEKEVES GLHLMQSVFL GSDRRYNRYW 840 LFLGPCSALG PCSAYDPGHR RVYFESSEDG HWEVIDTVED LCALLSVLDE RGKREAILIE 900 SLEKRQAFLL QAMSNKIVKS AGTRHLTQSD QSELDMVRED SCSPVSDVDN LSLTETIKDS 960 LPSSGAVVLD VGNKGEEQQE RWNRLQEFDS WIWNSFYSNL NAVKHGKRSY LDSLARCESC 1020 HDLYWRDEKH CRICHTTFEL DFDLEERYAI HEATCREKED SEILFPQHKV LSSQIQSLKA 1080 AIHAIESVMP EEALVGAWIK SAHKLWVKRL RRTSSMADLL QVLADFVGAI NEDWLCECNG 1140 QQVSFNIIEE TIASFASMPQ TSSAVALWLV ELDALIAPYL EKVRFQKKPE IFTKGRCAPK 1200 QSMQLS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 47 | 52 | ERRRRD |
| 2 | 48 | 53 | RRRRDK |
| 3 | 48 | 55 | RRRRDKRE |
| 4 | 113 | 119 | PKRKRKP |
| 5 | 114 | 138 | KRKRKPILLQHLLTSDYILKKVFRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G12750.1 | 1e-125 | HB-other family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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