PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023924270.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 191aa    MW: 21044.9 Da    PI: 7.3703
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023924270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260144.53.1e-4510108199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+
  XP_023924270.1  10 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARIRDPVYGCVGAISFLQRQVQRLQKELD 104
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  XP_023924270.1 105 SANS 108
                     9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MASSSSYNSP CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP  60
HQREDAVNSL AYEAEARIRD PVYGCVGAIS FLQRQVQRLQ KELDSANSDL IRFACNDIPT  120
SLPPPPPHGI VNNPVQPMPP RAARPVEFSR RIGNEAGGTF YQTPSFPLSY PLPWNDNPSG  180
DMNEGGGEGH M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.29e-74LBD family protein