PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023924264.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 371aa MW: 41949.7 Da PI: 5.6337

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023924264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl XP_023924264.1 14 KGLWSPEEDEKLFNHITRFGIGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.5	3.5e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l+ +++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_023924264.1 67 RGMFSQQEEDLIMSLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MGRHSCCLKQ KLRKGLWSPE EDEKLFNHIT RFGIGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIMS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG 120 IDPSTHKPLS KVEPKDEKKC TETTGFQSRG LPSTTVSTMA SQGGPAFLVD DSNYYDHNGL 180 TEASRELFMY KPSFDPMSYF EFQAGVDSNG YTSTFVPDQN HHTNIKPDID QSQFDTNSNY 240 GFTSMPSLTN SDRGNLSGIE FSDNSGSKMS SFFMNNEVKE SSSNSSNMSS YAGFQVNDIM 300 LENAAYSWDS DTKLEPLFQF QANEIKTEEL KACSWQEGQL QAHNSVEFGS YPLTSLSEDL 360 TGAHFDVFQQ I

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MGRHSCCLKQ KLRKGLWSPE EDEKLFNHIT RFGIGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIMS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPSTHKPLS KVEPKDEKKC TETTGFQSRG LPSTTVSTMA SQGGPAFLVD DSNYYDHNGL  180
TEASRELFMY KPSFDPMSYF EFQAGVDSNG YTSTFVPDQN HHTNIKPDID QSQFDTNSNY  240
GFTSMPSLTN SDRGNLSGIE FSDNSGSKMS SFFMNNEVKE SSSNSSNMSS YAGFQVNDIM  300
LENAAYSWDS DTKLEPLFQF QANEIKTEEL KACSWQEGQL QAHNSVEFGS YPLTSLSEDL  360
TGAHFDVFQQ I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	2e-81	MYB family protein