PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023924242.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 473aa    MW: 52592.6 Da    PI: 5.6581
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023924242.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.62.3e-141494701374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v++g+le+a+++L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ +   +see+ ++klf+e++P++k ++
  XP_023924242.1  49 LIHLLLTCANHVAAGSLENANTALEQISQLASPDGDTMQRIAAYFTEALADRILKAWPGLHKALNSTKLT--LVSEEILVQKLFFELFPFMKAAF 141
                     689*************************************************************999998..7********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege++vHiiD+++ +++QW+aL+q L++Rpegpp+lRiTgv++    ++e le+++ +L++ Ae+l++pf+fn+ v+++l++l+
  XP_023924242.1 142 VLTNQAIVEAMEGEKMVHIIDLNAAEPAQWIALIQVLSARPEGPPHLRITGVHQ----QREVLEQMAFKLTEEAEKLDIPFQFNP-VVSKLDNLD 231
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll......................................................desvsles..erdevLk 229
                     +e+Lrvk+gEala+++vlqlh+ll                                                      ++++s++   + d +++
  XP_023924242.1 232 FEKLRVKTGEALAISSVLQLHSLLasddellrkksplapknlngihlpgvlqinqstlgellekdlvnghsrspdsatSSPLSISAsaKMDGFVN 326
                     ****************************************************************************9944444443447899*** PP

            GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                     ++++l Pk++v++eq+++hn+++++er+leal+ y+alfd+le+++pr+  er k+E++l+g+ei+n++acegaer+erhe+lekW +rl+ aGF
  XP_023924242.1 327 ALWGLTPKLMVITEQDSNHNGSTLMERLLEALYSYAALFDCLESTVPRT-LERLKLEKMLFGEEIKNIIACEGAERKERHEKLEKWVQRLDLAGF 420
                     *********************************************9886.79******************************************* PP

            GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++vpls++ + qa +ll+ ++sdgy+++ee+g++v++W+dr+L+svSaWr
  XP_023924242.1 421 GNVPLSYYGMLQAGRLLQGYGSDGYKIKEENGCVVICWQDRALFSVSAWR 470
                     *************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    
MAPMFQDEGS SSVTSSPLQL FSMMSLSPNL GSPYPFVREL KSEERGLYLI HLLLTCANHV  60
AAGSLENANT ALEQISQLAS PDGDTMQRIA AYFTEALADR ILKAWPGLHK ALNSTKLTLV  120
SEEILVQKLF FELFPFMKAA FVLTNQAIVE AMEGEKMVHI IDLNAAEPAQ WIALIQVLSA  180
RPEGPPHLRI TGVHQQREVL EQMAFKLTEE AEKLDIPFQF NPVVSKLDNL DFEKLRVKTG  240
EALAISSVLQ LHSLLASDDE LLRKKSPLAP KNLNGIHLPG VLQINQSTLG ELLEKDLVNG  300
HSRSPDSATS SPLSISASAK MDGFVNALWG LTPKLMVITE QDSNHNGSTL MERLLEALYS  360
YAALFDCLES TVPRTLERLK LEKMLFGEEI KNIIACEGAE RKERHEKLEK WVQRLDLAGF  420
GNVPLSYYGM LQAGRLLQGY GSDGYKIKEE NGCVVICWQD RALFSVSAWR CRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein