PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023924209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 28395.1 Da PI: 8.3524 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k Fs++ L H++ H XP_023924209.1 78 FPCKYCSKKFSNSQALGGHQNAH 100 89******************997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence |
MSERISCRNV DGQGKAEVEL PMEVELDQLL DLRLSNSVVD GHASKVANNL LDGFDKKSPK 60 SLEGPEPFNE VKEKKQYFPC KYCSKKFSNS QALGGHQNAH KHERAFLKRM ASLDCHLNRY 120 YSPMPTLPHL HHESLNRALG VHMRSMIHKP FHSRPHAGVW YGKEVWSKPQ YGVHHLSMDD 180 YWVAGGGFQP RDMMGVNLRD AIDDFEHSSL ISNSTGSVAN NRIASLWDFQ GNSFSRNQQL 240 KAPGLDLSLN L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10970.1 | 3e-16 | C2H2 family protein |