PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023923664.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

SBP

Protein Properties

Length: 437aa MW: 48301.1 Da PI: 7.489

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023923664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.4	1.3e-40	203	280	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC++ l +ak+yhrrhkvCe+hskap+v+v gl qrfCqqCsrfh++sefDe+krsCrrrLa+hnerrrk+++ XP_023923664.1 203 RCQVDGCHVALINAKDYHRRHKVCEMHSKAPKVVVLGLDQRFCQQCSRFHAVSEFDESKRSCRRRLAGHNERRRKSSH 280 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MEIGGNMFGQ SNGNRGQNGN NNASLGWDIW ELSTSRLDWN TNSNNTFYNT TATAAAVSTA 60 ADDTSITAGS PTTTRNDASA SHALLFSDHN DSLGLLHHHF HYQHQNHDHN HNQQPLYAGD 120 GSHLHPDPHL MCLKLGKRHY FEQDTTNPLG DRHVSLPIPS SSSSSSIGKR GKPYYSGGVV 180 TVTSSSAATS SSSCSTLPAT VPRCQVDGCH VALINAKDYH RRHKVCEMHS KAPKVVVLGL 240 DQRFCQQCSR FHAVSEFDES KRSCRRRLAG HNERRRKSSH DSAATKNSTQ GGKFPYFSSS 300 PTGCALSLLS SKTDSWVSPP DLSTRSSAAL RELIAEHRAA ILARQLVFDR DWHTQHHAME 360 ELGDAQQPRS NSPIPHQYQM FPEPHSWDRF HESDTHVTLD LMQASSSAFG LLSMRGKNKD 420 DEECSDLWNS FHGAHVI

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MEIGGNMFGQ SNGNRGQNGN NNASLGWDIW ELSTSRLDWN TNSNNTFYNT TATAAAVSTA  60
ADDTSITAGS PTTTRNDASA SHALLFSDHN DSLGLLHHHF HYQHQNHDHN HNQQPLYAGD  120
GSHLHPDPHL MCLKLGKRHY FEQDTTNPLG DRHVSLPIPS SSSSSSIGKR GKPYYSGGVV  180
TVTSSSAATS SSSCSTLPAT VPRCQVDGCH VALINAKDYH RRHKVCEMHS KAPKVVVLGL  240
DQRFCQQCSR FHAVSEFDES KRSCRRRLAG HNERRRKSSH DSAATKNSTQ GGKFPYFSSS  300
PTGCALSLLS SKTDSWVSPP DLSTRSSAAL RELIAEHRAA ILARQLVFDR DWHTQHHAME  360
ELGDAQQPRS NSPIPHQYQM FPEPHSWDRF HESDTHVTLD LMQASSSAFG LLSMRGKNKD  420
DEECSDLWNS FHGAHVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	2e-37	SBP family protein