PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023923310.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 346aa MW: 38469.1 Da PI: 5.7063

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023923310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	8.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++ G g+W++ ++ g++R++k+c++rw +yl XP_023923310.1 14 KGPWTPEEDQKLTDYINSQGHGSWRSLPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51	3.3e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr++++E+ ++ ++ lG++ W++Ia ++ gRt++++k++w+++l XP_023923310.1 67 RGRFSEDEERTIISLHSVLGNK-WSRIATQLP-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRSPCCDEN GLKKGPWTPE EDQKLTDYIN SQGHGSWRSL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGRF SEDEERTIIS LHSVLGNKWS RIATQLPGRT DNEIKNYWNT HLRKKLLQMG 120 IDPTTHKPRT DLNHLMNLSQ LLGAASFGNL LSPWSSALGL QADASQLARI QLLQNMLQVI 180 NTSTLLNMDN VGLLQNQNLN PFEGLVNGTS TLYQKEPLLI GQEYLNQGVI PQAPSNSQGI 240 ISSSSGFEGQ FNMEDFLGSN NSTSSLSSSA CENQAENLMP ALVSGSPGTC TVNQVESKTD 300 PNQFLTQSST STSFEVWDKL KDDEINDFYW KDILESTPSS PPPMSW

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRSPCCDEN GLKKGPWTPE EDQKLTDYIN SQGHGSWRSL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGRF SEDEERTIIS LHSVLGNKWS RIATQLPGRT DNEIKNYWNT HLRKKLLQMG  120
IDPTTHKPRT DLNHLMNLSQ LLGAASFGNL LSPWSSALGL QADASQLARI QLLQNMLQVI  180
NTSTLLNMDN VGLLQNQNLN PFEGLVNGTS TLYQKEPLLI GQEYLNQGVI PQAPSNSQGI  240
ISSSSGFEGQ FNMEDFLGSN NSTSSLSSSA CENQAENLMP ALVSGSPGTC TVNQVESKTD  300
PNQFLTQSST STSFEVWDKL KDDEINDFYW KDILESTPSS PPPMSW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	3e-93	MYB family protein