PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023922590.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 218aa    MW: 24003.2 Da    PI: 7.9758
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023922590.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.12.2e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ +++++++++e++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  XP_023922590.1   2 SCNGCRVLRKGCSESCILRPCLqwidtPEAQGHATVFVAKFFGRAGLMSFISNVSESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_023922590.1  97 AVETVLR 103
                     *999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MSCNGCRVLR KGCSESCILR PCLQWIDTPE AQGHATVFVA KFFGRAGLMS FISNVSESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLTSGAPF  120
PSSDEVSEAE VTCTNMWNLG DPSPNSRPKV SPKRRRSGEP NKPYQTDLDL RLTPAKSVYN  180
QEIRRPGTPS MNSEESVTTF ESGFADQYGE RKLLNLFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-83LBD family protein