PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023922588.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 404aa    MW: 45473.3 Da    PI: 4.9282
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023922588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2982.4e-9124012373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalkl..fsevsP 89 
                     ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL ar a+  s+ +k l++ ++++ n      + ++    l  f++++P
  XP_023922588.1   2 EQLLVHCADAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIARAAN--SGSCKMLAAMANAHCNlamdvYKFSIIE--LasFVDLTP 92 
                     79***************************************************9..4444444444444333333223334444..356****** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
                     +++f++ +aN aIl+aveg +++Hi+D+++++++Q p+L +a+a+R e pp l++T+v s e +      ++ e+g++L +fA++ +v +ef+v+
  XP_023922588.1  93 WHRFGFTAANAAILDAVEGYTAIHIVDLSMTHCMQIPTLVDAIANRHEVPPLLKLTVVTSLEDVppiLDLSYDELGSKLVNFARSKNVMMEFRVI 187
                     ************************************************************998899889999**********************9 PP

            GRAS 182 ...vakrledleleeLrvkp......gEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvvvvveqeadhnse 251
                        + + +++l +e+Lrv++      +Eal++n++++lh+++                 + ++++s r+ +Lk+++sl P++vvvv+++ad +s+
  XP_023922588.1 188 pssYKDGFANL-IEQLRVQNylyadsNEALVINCHMMLHYIPeetlsaiptsnsslyaFDCLPSSSLRTMFLKALRSLDPTIVVVVDEDADFTSN 281
                     87655667777.89999999999999**************************99999877777778899************************** PP

            GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                     +++ r+ +a++y +  +d++++ lpr s +r ++E+  + ++i+nv+a+eg++r+er e +++W +r+++a F+ ++++e+a++++k++l +++ 
  XP_023922588.1 282 NLVCRLRSAFNYLWIPYDTMDSFLPRGSMQRLWYEAD-ICWKIENVIAHEGFQRVERLEPKSRWVQRMRNANFRGIAFGEDAVTEVKTMLDEHA- 374
                     *************************************.********************************************************. PP

            GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                      g+ +++e++ lvl+Wk++++++++aW
  XP_023922588.1 375 AGWGLKKEEEDLVLTWKGHNVLFATAW 401
                     899************************ PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MEQLLVHCAD AIESNDATLA QQILWVLNNI APPDGDSNQR LTCGFLRALI ARAANSGSCK  60
MLAAMANAHC NLAMDVYKFS IIELASFVDL TPWHRFGFTA ANAAILDAVE GYTAIHIVDL  120
SMTHCMQIPT LVDAIANRHE VPPLLKLTVV TSLEDVPPIL DLSYDELGSK LVNFARSKNV  180
MMEFRVIPSS YKDGFANLIE QLRVQNYLYA DSNEALVINC HMMLHYIPEE TLSAIPTSNS  240
SLYAFDCLPS SSLRTMFLKA LRSLDPTIVV VVDEDADFTS NNLVCRLRSA FNYLWIPYDT  300
MDSFLPRGSM QRLWYEADIC WKIENVIAHE GFQRVERLEP KSRWVQRMRN ANFRGIAFGE  360
DAVTEVKTML DEHAAGWGLK KEEEDLVLTW KGHNVLFATA WVLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-180GRAS family protein