PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023922531.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family YABBY
Protein Properties Length: 219aa    MW: 24496.6 Da    PI: 5.5352
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023922531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY197.46e-6161672169
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     ++f+ seq+ yvqC+fC+t+l+vsvP +sl++vvtvrCGhCt l+svn+++++  l   ++l + l++    ++++  ++ k+ +   +s+s   
  XP_023922531.1   6 QLFDLSEQIYYVQCGFCTTMLLVSVPCSSLSMVVTVRCGHCTALFSVNMNMMNASLVPIQNLWNCLNH-NEPTQQDCPDAQKVLD--WHSTSMLA 97 
                     68999*********************************************999877777775444322.2222222222222222..23333333 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                     ss   + +ed  ++  + v++PPekrqr+Psayn+fikeei+r+k++nP + h+eafsaaaknWahfP i ++
  XP_023922531.1  98 SS---DYEEDGIISVNHIVNKPPEKRQRAPSAYNQFIKEEIKRLKTENPMMGHKEAFSAAAKNWAHFPAIQYK 167
                     33...34455555555569**************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSTLSQLFDL SEQIYYVQCG FCTTMLLVSV PCSSLSMVVT VRCGHCTALF SVNMNMMNAS  60
LVPIQNLWNC LNHNEPTQQD CPDAQKVLDW HSTSMLASSD YEEDGIISVN HIVNKPPEKR  120
QRAPSAYNQF IKEEIKRLKT ENPMMGHKEA FSAAAKNWAH FPAIQYKGDG DYSQDGDYSQ  180
SEENVTLGSE GTEVHEAGKG FREGKALKRS HMGYVDTLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.11e-61YABBY family protein