PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023922408.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | C3H | ||||||||
Protein Properties | Length: 244aa MW: 28243.8 Da PI: 7.6688 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.8e-07 | 89 | 109 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+ G C+ Gd+C FaHg XP_023922408.1 89 ACSAFRT-GKCHKGDTCEFAHG 109 5777766.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MLKGINPSIY GFSEHQFPNL VPPEYYNNTI NNDHIDEAIF GSDEFRMYAY KIKRCPRMRS 60 HDWTECPYAH RGEKAQRRDP RKFSYSAVAC SAFRTGKCHK GDTCEFAHGV FEYWLHPARY 120 RTRACNAGRY CQRKVCFFAH TPEQLRSETN YKCHYTYRPR MISGGDGVRD GSSGQEDATT 180 PHLPLPLPVP VQLEKKHVVE NFCCDGVSEF LKSLRGLKIR DVEDNCESSE SDLPQIDWIS 240 ELVQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 3e-78 | C3H family protein |