PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023922407.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26497.2 Da PI: 5.6521 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 126 | 176 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ r++lg+f+t +Aa+a++ a+ k++g XP_023922407.1 126 HYRGVRRRP-WGKFAAEIRDPTRK--GHRVWLGTFDTDVDAARAYDCAAFKMRG 176 7********.**********8542..4**********99*************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence |
MATPAADESS TIELIRQHLL GDFTSTEYFI NSLNFSSSPK AYYATQPVKL EAQSPPSDSE 60 SNSLILDSND HNQQTSDFET KGSIDSTPKP HISSPKHLSK NACIESKVPE VAEGSNKATD 120 YSEWRHYRGV RRRPWGKFAA EIRDPTRKGH RVWLGTFDTD VDAARAYDCA AFKMRGCKAI 180 LNFPLEAGAS NHPPAVETNG RKRRREKRVE TPESDDVAVE SWVFWEGKDQ EEDESC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 201 | 205 | RKRRR |
2 | 201 | 207 | RKRRREK |
3 | 201 | 208 | RKRRREKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G07580.1 | 4e-41 | ERF family protein |