PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023921976.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

SBP

Protein Properties

Length: 390aa MW: 42862.8 Da PI: 8.0465

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023921976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128	3.7e-40	92	168	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrh+vCe hsk+p+v+v g+eqrfCqqCsrfh+l efDe krsCr+rL++hn rrrk+q+ XP_023921976.1 92 CLVDGCKSDLSNCRDYHRRHRVCERHSKTPAVIVGGKEQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNMRRRKSQS 168 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MDWDWKEFPW DSIELEPKED SSLASLVDSS SLAGQKNSGG GLMVDLKLGN LSDLEERSAA 60 GLKDLGASTM VSSPSGSSKR VRVLGGTQSV SCLVDGCKSD LSNCRDYHRR HRVCERHSKT 120 PAVIVGGKEQ RFCQQCSRFH SLGEFDEVKR SCRKRLDGHN MRRRKSQSES LSLSSDKFLS 180 NYKGTRILQF CSPHIYASGT TTMRSTWPEI TRSEAESMIY NRQQRLRITD RKSSPSSFAF 240 IYNEENKRFS FSQENGTKLG TQAVPKPSFY QSLPKSIASS ESGRGNNNLS SSGMTQSIDL 300 GCALYLLSSP PVSQTSAIGL SQLVQSSVSH PIQSLDSGQQ LTGVAQYSCS QGVRDKSAGL 360 VFVPDANETD MYCNDMFQGA LDALLENEAS

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MDWDWKEFPW DSIELEPKED SSLASLVDSS SLAGQKNSGG GLMVDLKLGN LSDLEERSAA  60
GLKDLGASTM VSSPSGSSKR VRVLGGTQSV SCLVDGCKSD LSNCRDYHRR HRVCERHSKT  120
PAVIVGGKEQ RFCQQCSRFH SLGEFDEVKR SCRKRLDGHN MRRRKSQSES LSLSSDKFLS  180
NYKGTRILQF CSPHIYASGT TTMRSTWPEI TRSEAESMIY NRQQRLRITD RKSSPSSFAF  240
IYNEENKRFS FSQENGTKLG TQAVPKPSFY QSLPKSIASS ESGRGNNNLS SSGMTQSIDL  300
GCALYLLSSP PVSQTSAIGL SQLVQSSVSH PIQSLDSGQQ LTGVAQYSCS QGVRDKSAGL  360
VFVPDANETD MYCNDMFQGA LDALLENEAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	166	MRRRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-39	SBP family protein