PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023921866.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 335aa    MW: 37333 Da    PI: 6.7882
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023921866.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.2e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv++++++G g+W++ ++  g++R++k+c++rw +yl
   XP_023921866.1 14 KGPWTSEEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.89.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
   XP_023921866.1  67 RGKFSQDEEQTILNLHAVLGNK-WSAIAGHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MGRPPCCDEN GLKKGPWTSE EDQKLVKYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQDEEQTILN LHAVLGNKWS AIAGHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFSSLPHLI ALANLKELVD HHSWEEQTVR LQAEAIQMAR VQYLQYLLQP  180
LASNGTTNNN LNSSFMDMDS TVSLLNSLSS MKDNLALSSP HQLDTPTQSL GTSTLQSVPD  240
SILFSHLPQL ENPCTYQTPL NKDNMVQANE FTAFSQGENS PNSPWLASSS STPSPSVAPP  300
AETNSIDACS TSSYGGAPFA WPDLLLEDPL FHELS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-109MYB family protein