PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023921792.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 444aa    MW: 50285.4 Da    PI: 5.5911
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023921792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.14.2e-118414411373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+elL ecA +v+++ l+ +++ L+++s lasp+g+++qR+a+yf eA a r+++  ++l kal++++ s  ++see+ ++klf+e +P+lkf++
  XP_023921792.1  41 LIELLGECASHVTARCLHSVNTRLEHISYLASPKGTAIQRIASYFIEAFADRMLKGFTGLHKALNSTKIS--SVSEEILVQKLFYEHCPFLKFAY 133
                     5789************************************************************999998..6********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     l++NqaI+ea+ege+ vHiiD+   ++ QW+ LlqaL+ R+eg+p+l+iTg+++    ++e le++  +L++ A++l +pf+fn+ +++++e+l+
  XP_023921792.1 134 LITNQAIMEAMEGEKVVHIIDLYPVEPEQWIRLLQALSVRQEGAPHLKITGIHE----QNEVLEKMDLQLKEEADRLSIPFQFNP-IVSTIENLD 223
                     ******************************************************....9**************************.79******* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll....................................desvsleserdevLklvkslsPkvvvvveqeadhn 249
                     +e+L +k+gEalaV +vlqlh+ll                                    + s+s + + +++L+ +++ sPk++v++eqea+hn
  XP_023921792.1 224 IESLGIKTGEALAVISVLQLHSLLavdeevvrrnqqslqqfletdlnhlfiasasssttsELSLSASPKMESFLSSLRRFSPKLMVITEQEANHN 318
                     *******************************************************99977555555557888*********************** PP

            GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                     + ++ er+ +a+++y+alfd+l+++ + +  e++kvE++l+g+ei+n+vac gaer+erhe+lekW  +le aGF+ vp+s++   +a+++l+ +
  XP_023921792.1 319 GFTLIERVHNAMKFYAALFDCLDSTKSIAPIEQQKVEKMLFGEEIKNIVACDGAERKERHEKLEKWILWLELAGFSRVPFSYYGRVDASTMLQYY 413
                     **********************99988999**************************************************************999 PP

            GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + dgy+  ee+g+lv++W++ pL+svSaW
  XP_023921792.1 414 S-DGYSFTEENGCLVIYWHEIPLFSVSAW 441
                     8.*************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    
MARTKQEGRS SLTSSHESSP GLGSPYPWLR SPQSEEGGLQ LIELLGECAS HVTARCLHSV  60
NTRLEHISYL ASPKGTAIQR IASYFIEAFA DRMLKGFTGL HKALNSTKIS SVSEEILVQK  120
LFYEHCPFLK FAYLITNQAI MEAMEGEKVV HIIDLYPVEP EQWIRLLQAL SVRQEGAPHL  180
KITGIHEQNE VLEKMDLQLK EEADRLSIPF QFNPIVSTIE NLDIESLGIK TGEALAVISV  240
LQLHSLLAVD EEVVRRNQQS LQQFLETDLN HLFIASASSS TTSELSLSAS PKMESFLSSL  300
RRFSPKLMVI TEQEANHNGF TLIERVHNAM KFYAALFDCL DSTKSIAPIE QQKVEKMLFG  360
EEIKNIVACD GAERKERHEK LEKWILWLEL AGFSRVPFSY YGRVDASTML QYYSDGYSFT  420
EENGCLVIYW HEIPLFSVSA WSFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-135GRAS family protein