PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023921783.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 470aa    MW: 52823.8 Da    PI: 6.4527
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023921783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.71.5e-129484661374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL ecA +v +g++e+a+  L+++s+laspdgd+mqR+aayft+ALa r+++ +++l kal++++ s  ++see+ ++klf+e +P+lk+++
  XP_023921783.1  48 LIRLLQECAAHVGTGSMENANLGLEHISHLASPDGDTMQRIAAYFTQALADRMLKGWPGLHKALNSTKLS--SVSEEVLIQKLFFEFCPFLKVAY 140
                     5789************************************************************999998..599******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     l++NqaI ea+ege+ vHiiD+   +++QW++Llq +++Rpegpp+l+iTg+++    +k  le+++ +L + A++l++pf+fn+ ++ +le+l+
  XP_023921783.1 141 LITNQAIIEAMEGEKVVHIIDLYSIEPAQWINLLQMISARPEGPPHLKITGIHE----QKVVLEQMALQLVEEADRLDIPFQFNP-IVCKLENLD 230
                     ******************************************************....9**************************.5788***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll....................................................desvsleserdevLklvks 233
                     le+L vk+gEalaV+++l+lh+ll                                                     +s++ + + +++L+ ++s
  XP_023921783.1 231 LESLGVKTGEALAVSSILKLHSLLatdddmlrrdspvalknlqkvfhnrqrplrefldkdlinlylaspdststssPRSLCASPKMESFLSSLWS 325
                     **********************************************************************999987555555557899******* PP

            GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                     lsPkv+v++eqeadhn+ +++er+ +al++y+alfd+l+++++r+  er+k+E++l+g+ei+n++acegaer+erhe+lekW +rle aGF+ vp
  XP_023921783.1 326 LSPKVMVITEQEADHNGFTLMERVKKALNFYAALFDCLDSTVSRAPIERHKIEKMLFGEEIKNIIACEGAERKERHEKLEKWISRLELAGFGRVP 420
                     *********************************************************************************************** PP

            GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +s++   qa +ll+  +  gy+ +ee+g+lv++Wk+ pL+svSaWr
  XP_023921783.1 421 FSYYGRLQAGRLLQISNYGGYNFKEENGCLVICWKSIPLFSVSAWR 466
                     *****************9***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MAGAVQEDGS SVTSSSHESS PWMQLSPGLG SPSPWIRELG SEERGLRLIR LLQECAAHVG  60
TGSMENANLG LEHISHLASP DGDTMQRIAA YFTQALADRM LKGWPGLHKA LNSTKLSSVS  120
EEVLIQKLFF EFCPFLKVAY LITNQAIIEA MEGEKVVHII DLYSIEPAQW INLLQMISAR  180
PEGPPHLKIT GIHEQKVVLE QMALQLVEEA DRLDIPFQFN PIVCKLENLD LESLGVKTGE  240
ALAVSSILKL HSLLATDDDM LRRDSPVALK NLQKVFHNRQ RPLREFLDKD LINLYLASPD  300
STSTSSPRSL CASPKMESFL SSLWSLSPKV MVITEQEADH NGFTLMERVK KALNFYAALF  360
DCLDSTVSRA PIERHKIEKM LFGEEIKNII ACEGAERKER HEKLEKWISR LELAGFGRVP  420
FSYYGRLQAG RLLQISNYGG YNFKEENGCL VICWKSIPLF SVSAWRRWSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein