PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023921726.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 493aa MW: 54030.1 Da PI: 6.3673

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023921726.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+Cg+s+++ ++ H t+ XP_023921726.1 134 YECPICGQSYRSEEEVSAHVDTC 156 99*****************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MGDMKDKVKG FMKKVNNPFS SSSSSSGKFK GQGRVLGSSS SSSSSSGPTN PILSRPSSQI 60 QNPSPQPRKE PNSVTSDSKP KPLPQKPPIS DHKDRSDLTN DSTPNRKPAN GFDPFDSMIT 120 FGKRSQNGYS LNVYECPICG QSYRSEEEVS AHVDTCVNNS VEANGGGGGG GGSDLADNGA 180 ESRSELECRV GAFVSGKPSE GSVEVVLKLL RNIVREPENA KFRRIRMSNP KIREAIGEVA 240 GGVELLEFVG FGLKEEDGEM WVVMEVPTEE QISLINSATG LLGPQKVEEP QKKEDLQSAA 300 SANVEKQIEP KKVDRQVRVF FSVPESVAAK IELPDSFYNL SLEEIKREAD MRKKKMAESQ 360 LLIPKSFKDK QAKAARRRYR KTVIRIQFPD GVVLQGIFNP WERTSSLYEF VSSALKEPSL 420 EFELLHPVVV KRRVIPNIPA AGETAITLED EDLVPSALIK FRPIETDSVV FTGLCNDLLE 480 ICEPLVNDSA VPK

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MGDMKDKVKG FMKKVNNPFS SSSSSSGKFK GQGRVLGSSS SSSSSSGPTN PILSRPSSQI  60
QNPSPQPRKE PNSVTSDSKP KPLPQKPPIS DHKDRSDLTN DSTPNRKPAN GFDPFDSMIT  120
FGKRSQNGYS LNVYECPICG QSYRSEEEVS AHVDTCVNNS VEANGGGGGG GGSDLADNGA  180
ESRSELECRV GAFVSGKPSE GSVEVVLKLL RNIVREPENA KFRRIRMSNP KIREAIGEVA  240
GGVELLEFVG FGLKEEDGEM WVVMEVPTEE QISLINSATG LLGPQKVEEP QKKEDLQSAA  300
SANVEKQIEP KKVDRQVRVF FSVPESVAAK IELPDSFYNL SLEEIKREAD MRKKKMAESQ  360
LLIPKSFKDK QAKAARRRYR KTVIRIQFPD GVVLQGIFNP WERTSSLYEF VSSALKEPSL  420
EFELLHPVVV KRRVIPNIPA AGETAITLED EDLVPSALIK FRPIETDSVV FTGLCNDLLE  480
ICEPLVNDSA VPK