PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023921511.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 800aa MW: 88912.2 Da PI: 6.9026

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023921511.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.9	4.5e-24	167	268	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_023921511.1 167 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVKWTFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEN 258 99**************************963.3445679********************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023921511.1 259 GELRLGIRRA 268 999**996 PP
2	Auxin_resp	126.6	1.6e-41	293	374	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks F+v+Y+Pras++eFv++++k++k+++++v++G+Rfkm+fe++ds+err+sG+v+gvsd+dp+rWpnSkWr+L XP_023921511.1 293 VANAISTKSKFHVFYSPRASHAEFVIPYQKYVKSITNPVTIGTRFKMRFEMDDSPERRCSGVVTGVSDMDPYRWPNSKWRCL 374 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence
MEIDLNHAVS EVEKNAYCNG NCGKDGCVCC LSSSTSSCSS NSSSPPNVSS SIYLELWHAC 60 AGPLTSLPKK GNVVVYFPQG HLEQAASASP FSPMEMPTFD LQPQIFCSVV NVQLLANKEN 120 DEVYTQVTLL PRPELVGKNS EGKELEELGV DEEGGGGSPT KSTPHMFCKT LTASDTSTHG 180 GFSVPRRAAE DCFPPLDYKQ QRPSQELVAK DLHGVKWTFR HIYRGQPRRH LLTTGWSIFV 240 SQKNLVSGDA VLFLRGENGE LRLGIRRAVR PRNGLPDSII GNENSYPKVL SLVANAISTK 300 SKFHVFYSPR ASHAEFVIPY QKYVKSITNP VTIGTRFKMR FEMDDSPERR CSGVVTGVSD 360 MDPYRWPNSK WRCLMVRWDE DIASDHRDRV SPWEIDPSVS LPPLSIQSSP RLKKLRTGLQ 420 PAPPDNPVTG GGGFLDFEES VRSSKVLQGQ ENIGFISPFY GCDTVNRPLD FEMRSPAHQK 480 RASTGIEKSN ISEFLTAHPT TYTGFVESDR FPKVLQGQEI CPLRSLTRKS EFNLDAWRKP 540 SPGCNSFNMY QASKPNFYPL ESENLQSMYF HYKDIYKAGS DPRMRSYANN LTRENVSFNP 600 SSIQTGVITN EFGKPNLPNE HRPATHVPAP PTLGTNMRNP KDENFNGIVT GCKLFGFSLT 660 GETPNSQVSG KRSCTKVHKQ GSLVGRAIDL SRLNGYGDLL SELERLFSME GLLQDPDKGW 720 RILYTDSEND VMVVGDDPWH EFCNVVSKIH IYTQEEVEKM TIGLISDDTQ SCLEQAPVVM 780 EASKSSSVGQ PDSSPTVIRV

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence

MEIDLNHAVS EVEKNAYCNG NCGKDGCVCC LSSSTSSCSS NSSSPPNVSS SIYLELWHAC  60
AGPLTSLPKK GNVVVYFPQG HLEQAASASP FSPMEMPTFD LQPQIFCSVV NVQLLANKEN  120
DEVYTQVTLL PRPELVGKNS EGKELEELGV DEEGGGGSPT KSTPHMFCKT LTASDTSTHG  180
GFSVPRRAAE DCFPPLDYKQ QRPSQELVAK DLHGVKWTFR HIYRGQPRRH LLTTGWSIFV  240
SQKNLVSGDA VLFLRGENGE LRLGIRRAVR PRNGLPDSII GNENSYPKVL SLVANAISTK  300
SKFHVFYSPR ASHAEFVIPY QKYVKSITNP VTIGTRFKMR FEMDDSPERR CSGVVTGVSD  360
MDPYRWPNSK WRCLMVRWDE DIASDHRDRV SPWEIDPSVS LPPLSIQSSP RLKKLRTGLQ  420
PAPPDNPVTG GGGFLDFEES VRSSKVLQGQ ENIGFISPFY GCDTVNRPLD FEMRSPAHQK  480
RASTGIEKSN ISEFLTAHPT TYTGFVESDR FPKVLQGQEI CPLRSLTRKS EFNLDAWRKP  540
SPGCNSFNMY QASKPNFYPL ESENLQSMYF HYKDIYKAGS DPRMRSYANN LTRENVSFNP  600
SSIQTGVITN EFGKPNLPNE HRPATHVPAP PTLGTNMRNP KDENFNGIVT GCKLFGFSLT  660
GETPNSQVSG KRSCTKVHKQ GSLVGRAIDL SRLNGYGDLL SELERLFSME GLLQDPDKGW  720
RILYTDSEND VMVVGDDPWH EFCNVVSKIH IYTQEEVEKM TIGLISDDTQ SCLEQAPVVM  780
EASKSSSVGQ PDSSPTVIRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein