PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023921510.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 801aa MW: 88983.3 Da PI: 6.9026

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023921510.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.9	4.5e-24	167	268	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_023921510.1 167 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVKWTFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEN 258 99**************************963.3445679********************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023921510.1 259 GELRLGIRRA 268 999**996 PP
2	Auxin_resp	126.6	1.6e-41	293	374	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks F+v+Y+Pras++eFv++++k++k+++++v++G+Rfkm+fe++ds+err+sG+v+gvsd+dp+rWpnSkWr+L XP_023921510.1 293 VANAISTKSKFHVFYSPRASHAEFVIPYQKYVKSITNPVTIGTRFKMRFEMDDSPERRCSGVVTGVSDMDPYRWPNSKWRCL 374 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence
MEIDLNHAVS EVEKNAYCNG NCGKDGCVCC LSSSTSSCSS NSSSPPNVSS SIYLELWHAC 60 AGPLTSLPKK GNVVVYFPQG HLEQAASASP FSPMEMPTFD LQPQIFCSVV NVQLLANKEN 120 DEVYTQVTLL PRPELVGKNS EGKELEELGV DEEGGGGSPT KSTPHMFCKT LTASDTSTHG 180 GFSVPRRAAE DCFPPLDYKQ QRPSQELVAK DLHGVKWTFR HIYRGQPRRH LLTTGWSIFV 240 SQKNLVSGDA VLFLRGENGE LRLGIRRAVR PRNGLPDSII GNENSYPKVL SLVANAISTK 300 SKFHVFYSPR ASHAEFVIPY QKYVKSITNP VTIGTRFKMR FEMDDSPERR CSGVVTGVSD 360 MDPYRWPNSK WRCLMVRWDE DIASDHRDRV SPWEIDPSVS LPPLSIQSSP RLKKLRTGLQ 420 PAPPDNPVTA GGGGFLDFEE SVRSSKVLQG QENIGFISPF YGCDTVNRPL DFEMRSPAHQ 480 KRASTGIEKS NISEFLTAHP TTYTGFVESD RFPKVLQGQE ICPLRSLTRK SEFNLDAWRK 540 PSPGCNSFNM YQASKPNFYP LESENLQSMY FHYKDIYKAG SDPRMRSYAN NLTRENVSFN 600 PSSIQTGVIT NEFGKPNLPN EHRPATHVPA PPTLGTNMRN PKDENFNGIV TGCKLFGFSL 660 TGETPNSQVS GKRSCTKVHK QGSLVGRAID LSRLNGYGDL LSELERLFSM EGLLQDPDKG 720 WRILYTDSEN DVMVVGDDPW HEFCNVVSKI HIYTQEEVEK MTIGLISDDT QSCLEQAPVV 780 MEASKSSSVG QPDSSPTVIR V

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence

MEIDLNHAVS EVEKNAYCNG NCGKDGCVCC LSSSTSSCSS NSSSPPNVSS SIYLELWHAC  60
AGPLTSLPKK GNVVVYFPQG HLEQAASASP FSPMEMPTFD LQPQIFCSVV NVQLLANKEN  120
DEVYTQVTLL PRPELVGKNS EGKELEELGV DEEGGGGSPT KSTPHMFCKT LTASDTSTHG  180
GFSVPRRAAE DCFPPLDYKQ QRPSQELVAK DLHGVKWTFR HIYRGQPRRH LLTTGWSIFV  240
SQKNLVSGDA VLFLRGENGE LRLGIRRAVR PRNGLPDSII GNENSYPKVL SLVANAISTK  300
SKFHVFYSPR ASHAEFVIPY QKYVKSITNP VTIGTRFKMR FEMDDSPERR CSGVVTGVSD  360
MDPYRWPNSK WRCLMVRWDE DIASDHRDRV SPWEIDPSVS LPPLSIQSSP RLKKLRTGLQ  420
PAPPDNPVTA GGGGFLDFEE SVRSSKVLQG QENIGFISPF YGCDTVNRPL DFEMRSPAHQ  480
KRASTGIEKS NISEFLTAHP TTYTGFVESD RFPKVLQGQE ICPLRSLTRK SEFNLDAWRK  540
PSPGCNSFNM YQASKPNFYP LESENLQSMY FHYKDIYKAG SDPRMRSYAN NLTRENVSFN  600
PSSIQTGVIT NEFGKPNLPN EHRPATHVPA PPTLGTNMRN PKDENFNGIV TGCKLFGFSL  660
TGETPNSQVS GKRSCTKVHK QGSLVGRAID LSRLNGYGDL LSELERLFSM EGLLQDPDKG  720
WRILYTDSEN DVMVVGDDPW HEFCNVVSKI HIYTQEEVEK MTIGLISDDT QSCLEQAPVV  780
MEASKSSSVG QPDSSPTVIR V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein