PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023920662.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 938aa MW: 104244 Da PI: 6.8296

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023920662.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.1	8.1e-24	127	228	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_023920662.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217 99***************************8544444..48********************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_023920662.1 218 KNQLLLGIRRA 228 9999**997 PP
2	Auxin_resp	119.2	3.2e-39	253	336	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpv+WpnS+Wrs+k XP_023920662.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVChTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVK 336 79******************************97689****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence
MRLSSAGFSP QSQEGEQRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNRE 60 VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDA YLPAELGTPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVCHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPVKWPNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPPG LPSFHGIKDE DLGVNSPLMW LRDNGDRGIQ SLNFQGIGVS 420 PWMQPRLDAS MLGLPTDMYQ AMAAAALQEM RAVDPSKAPP TSLLQFQQPQ NLQSRSAALM 480 QPQMVQHSQS QQAFLQSVQE NQHQSHSQAQ AQSQLLQQHL QHQHSFNNHH HHHHQQQQQQ 540 QQQQQQQQQQ HQQQQQHQHQ HQQQQQQQQQ QPQPQPQPQL VDHQQISSAV STMSQFASSS 600 QSQSPSLQAI PSLCQQQSFS DSNGNPVTSP IVSPLHSLLG SFPQDESSHL LNLPRTSSLI 660 SSTTWPSKRA AVEPLFSSGA SHCVLPQAEK LGMPQANISS NSISLPPFPG RECSIDQGST 720 DPHSHLLFGV NIEPSTLLMQ NGMSGLKGVG SDSNSTTVPF PSSNYMSTAG SDFSLNPAVT 780 PSSCIDESGF LQSPENVGQV NPPTRTFVKV HKSGSFGRSL DITKFSSYHE LRGELAQMFG 840 LEGELEDPLR SGWQLVFVDR ENDVLLLGDD PWPEFVNSVW CIKILSPQEV QQMGKRGLEL 900 LNSVPIQRLS SNSCDDYAGR QDSRNLSSGI TSVGSLEY

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence

MRLSSAGFSP QSQEGEQRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNRE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVCHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVKWPNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFHGIKDE DLGVNSPLMW LRDNGDRGIQ SLNFQGIGVS  420
PWMQPRLDAS MLGLPTDMYQ AMAAAALQEM RAVDPSKAPP TSLLQFQQPQ NLQSRSAALM  480
QPQMVQHSQS QQAFLQSVQE NQHQSHSQAQ AQSQLLQQHL QHQHSFNNHH HHHHQQQQQQ  540
QQQQQQQQQQ HQQQQQHQHQ HQQQQQQQQQ QPQPQPQPQL VDHQQISSAV STMSQFASSS  600
QSQSPSLQAI PSLCQQQSFS DSNGNPVTSP IVSPLHSLLG SFPQDESSHL LNLPRTSSLI  660
SSTTWPSKRA AVEPLFSSGA SHCVLPQAEK LGMPQANISS NSISLPPFPG RECSIDQGST  720
DPHSHLLFGV NIEPSTLLMQ NGMSGLKGVG SDSNSTTVPF PSSNYMSTAG SDFSLNPAVT  780
PSSCIDESGF LQSPENVGQV NPPTRTFVKV HKSGSFGRSL DITKFSSYHE LRGELAQMFG  840
LEGELEDPLR SGWQLVFVDR ENDVLLLGDD PWPEFVNSVW CIKILSPQEV QQMGKRGLEL  900
LNSVPIQRLS SNSCDDYAGR QDSRNLSSGI TSVGSLEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	0.0	ARF family protein