PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023920535.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 487aa MW: 54809.3 Da PI: 6.8281

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023920535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	28	72	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEd++l + + ++G+++W+ Ia+++ +t qc+ rw++yl XP_023920535.1 28 TWSQEEDDILREQIGLHGTENWAIIASKFK-DKTTRQCRRRWYTYL 72 6**************************9.***********97 PP
2	Myb_DNA-binding	45.5	1.8e-14	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd+ll +a k++G++ W+ Ia+ + gRt++ +k+r+ + XP_023920535.1 78 KGGWSPEEDLLLCEAQKMFGNR-WTEIAKVVS-GRTDNAVKNRFST 121 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MQESMKKKKI NNNNSNEDSK KKERHIVTWS QEEDDILREQ IGLHGTENWA IIASKFKDKT 60 TRQCRRRWYT YLNSDFKKGG WSPEEDLLLC EAQKMFGNRW TEIAKVVSGR TDNAVKNRFS 120 TLCKKRAKYE ALAKENASSY INSNNKRVVP QNGYNTDRTS GTAATLKKMR RTHISDFTEN 180 YNLRDRSHKP CGTINQQLRA PFAVLVQNFH NINNLPAQHQ LNSAKEVLND EAAQNDKIQG 240 TFLKKDDPKI TALMQQAELL SSLALKVNTE NTDQSLENAW KALQDFLNRS KECDILNYRF 300 PDIDLQLEDF KDLVDDLRSC NEGSQQSWRQ PDLYDESPGS SDYSTGSTLL LHSAGNKLEQ 360 GHAEICSLHQ DIGTGSESIH IEEQKDVGEC ENGVISGATP KQGIFMCCDE QPSNDGVVCV 420 SSSTDFGSPL QVTPLFRSLA AGIPSPKFSE SERSFLLKTL GMESPCPNPS ANLSQPPTCK 480 RALLQSL

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MQESMKKKKI NNNNSNEDSK KKERHIVTWS QEEDDILREQ IGLHGTENWA IIASKFKDKT  60
TRQCRRRWYT YLNSDFKKGG WSPEEDLLLC EAQKMFGNRW TEIAKVVSGR TDNAVKNRFS  120
TLCKKRAKYE ALAKENASSY INSNNKRVVP QNGYNTDRTS GTAATLKKMR RTHISDFTEN  180
YNLRDRSHKP CGTINQQLRA PFAVLVQNFH NINNLPAQHQ LNSAKEVLND EAAQNDKIQG  240
TFLKKDDPKI TALMQQAELL SSLALKVNTE NTDQSLENAW KALQDFLNRS KECDILNYRF  300
PDIDLQLEDF KDLVDDLRSC NEGSQQSWRQ PDLYDESPGS SDYSTGSTLL LHSAGNKLEQ  360
GHAEICSLHQ DIGTGSESIH IEEQKDVGEC ENGVISGATP KQGIFMCCDE QPSNDGVVCV  420
SSSTDFGSPL QVTPLFRSLA AGIPSPKFSE SERSFLLKTL GMESPCPNPS ANLSQPPTCK  480
RALLQSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02820.2	0.0	MYB family protein