PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023919941.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 846aa    MW: 92681.8 Da    PI: 6.354
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023919941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-181876357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_023919941.1 18 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                    6789*****************************************************97 PP
2START177.39.2e-561673742204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+ ++ W ++++++++l +i +g  g+++l+
  XP_023919941.1 167 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKERLSWFRDCRSIDVLSAIPTGngGTIELI 260
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p    + s+vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l+
  XP_023919941.1 261 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPAgppTTSFVRAEVLPSGYLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLY 355
                     ***************************************999998888*********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++va+l++ +
  XP_023919941.1 356 ESSKILAQKMTVAALRHIR 374
                     ***************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    
MALSMHKDSV NKQMDSSKYV RYTPEQVEAL ERVYTECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSH LVYENGYMRQ  120
QLQSASGTTT DNSCESVVMS GQQQQQQNPT PQHPQRDANN PAGLLAIAEE TLAEFLSKAT  180
GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KERLSWFRDC  240
RSIDVLSAIP TGNGGTIELI YMQTYAPTTL AAARDFWTLR YTTSLEDGSL VICERSLTSS  300
TGGPAGPPTT SFVRAEVLPS GYLIRPCEGG GSIIHIVDHV DLDAWSVPEV LRPLYESSKI  360
LAQKMTVAAL RHIRQIAQES SGEIQYGGGR QPAVLRTFSQ RLCRGFNDAV NGFADDGWSL  420
MGSDGVEDVT IMINSSPNKF LGSQYSTSMF STFGGGVLCA KASMLLQNVP PALLVRFLRE  480
HRSEWADYGV DAYSAACLKA SPYAVPCARP GGFPGSQVIL PLAHTVEHEE FLEVVRLEGH  540
AFSPEDVALA RDMYLLQLCS GVDENAVGAC AQLVFAPIDE SFADDAPLLP SGFRVIPLDP  600
KPDGPAATRT LDLASTLEVG AGGARPAGEA DLNGYNLRSV LTIAFQFTFE SHLRDNVAAM  660
ARQYVRSVVG SVQRVAMAIS PSRLSSHMGP KPLPGSPEAL TLARWICRSY RIHTGGELFR  720
VESQASDAIL KQLWLHSDAI LCCSVKTNAS PVFTFANQAG LDMLETTLVA LQDIMLDKIL  780
DEAGRKILCS EFSKIMQQGF AYLPAGICLS SMGRPVSYEQ AIAWKVLNDD DSNHCLAFMF  840
LNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein