PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023919877.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 253aa MW: 29490.4 Da PI: 6.8907

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023919877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.1	3.5e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien + rqvtf+kRr g++KK +ELSvLCda++ +++fss+gklyey+s XP_023919877.1 9 SRIENRTTRQVTFAKRRVGLFKKTHELSVLCDAQIGIMVFSSSGKLYEYCS 59 59***********************************************96 PP
2	K-box	60.6	6.4e-21	82	169	9	96
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ + e++q el+++++e+ +L+ ++ ++ GedL+s ++ +L++Leq+Le++++k+R++ ell +qi++l++k k+l++en++L + XP_023919877.1 82 ESNDQLEQMQGELKRMQRETLSLELSLQRYTGEDLNSVQFGDLHELEQKLENAVNKVRERMFELLQQQIDNLRRKGKMLHDENENLYH 169 5677899******************************************************************************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MGRRRVSISR IENRTTRQVT FAKRRVGLFK KTHELSVLCD AQIGIMVFSS SGKLYEYCSD 60 TSGMEHIIRR YKIATGTDQI PESNDQLEQM QGELKRMQRE TLSLELSLQR YTGEDLNSVQ 120 FGDLHELEQK LENAVNKVRE RMFELLQQQI DNLRRKGKML HDENENLYHL NQLKENQVAL 180 DHQAALDQHQ QMTMVPKASE DRRRVLESFP FSGEEQPSSV LPQATLPPLF NPYRLQPTQP 240 NLQDFSLQLP DYV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	LRRKGKM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	1e-58	MIKC_MADS family protein