PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023919402.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family FAR1
Protein Properties Length: 756aa    MW: 85942.9 Da    PI: 6.8934
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023919402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1607.4e-1947131290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Yn++A + GFs+rk++ +    ng i +r+fvCsk+g++e e+   + ++ ++  trtgC a+++   + d++w v  ++  HnHe+a
  XP_023919402.1  47 LYNAHAFKKGFSIRKATRRVV--NGVIRQREFVCSKQGFKEFEDPV-NAKKFNHLDTRTGCCARIRFDVK-DDVWTVVLFNDTHNHEFA 131
                     7***************98777..******************99988.99999****************99.9***************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    
MDLSRTAPDV IEEGDNGEDC RIVNSREFDG EIKLGMQVSS EEEAYDLYNA HAFKKGFSIR  60
KATRRVVNGV IRQREFVCSK QGFKEFEDPV NAKKFNHLDT RTGCCARIRF DVKDDVWTVV  120
LFNDTHNHEF ASPEQKLNLR SGRKVLNASG NTTSTNAKAT GSCSCSRLSK EVDGANKIGL  180
SKLDSHNYLP TVRKEMIEAG DGQSVFNHFR HKQSEDPMFF YSLQVDQDNR MANVFWRDGR  240
SKLDYGYFGD VVIFDTFRIN SYNLICAPFV GVNHHWKNVL FGCAFLIDET TESFIWLFKT  300
FLAAMGGQQP KSIFTDQDQT MANAINLVFP KSRHRLCPWH ISKNAKQHLG GLYTINADFN  360
SRFDKCLNGC INEMEFESTW NDMIEKYNLQ SHEWLNSLYE DREKWCTALS VDFFSAKLKS  420
SQRKESSTSI FHQIMRKPMQ LIQAIQSFEE KIAQMRQDES NEDFRCKNGA PSKVTRYGGI  480
LSHAASVYTH ALFRVFEEEL NSCLGLSCVE TNHHGNNSIY SLTELGNGSV HIVEFDRSKL  540
IICCSCKLFE TLGLLCCHAL RVFVVNNVNV IPDKYISNKW TKDAKKGLYC FDDSSQENEK  600
STRASRLSEL CHLGYIVFEK ASLTNSRTKI VKDKLREALH LVEKDVASMG MAEIVGQECL  660
QEDPNNSDDM EPCVVGDKQV FDPPHVRKKR KRVKDAITLQ TPQPSHMVHG DGQSSSSSLE  720
LSFDDHNFNL TRTPQESTSV PYLSPESTTS KDGMQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1687692RKKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-115FAR1 family protein