PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023919022.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 710aa    MW: 78362 Da    PI: 6.5484
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023919022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-202277156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q+++Le +F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  XP_023919022.1 22 KKRYHRHTAHQIQRLEGMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 77
                    688999***********************************************998 PP
2START187.95.1e-592214452206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     +a +a++el+++ + ++p+W+ks+    + ++ + + ++f+++++       ++ea+r+s vv+m+   lv  ++d++ +W e ++     a tl
  XP_023919022.1 221 IAATAMEELLRLLQTNDPLWMKSPtdgmDVLDLESYERIFPRGNTnlknphVRIEASRDSCVVIMNGLALVDMFMDSN-KWVELFPtivsMARTL 314
                     6789********************999999999999999999999*****99**************************.******9999999*** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     evissg      g lqlm+ elq+lsplvp R+f+f+Ry++q ++g+w+ivdvS d  ++++  +s  R+++lpSg+li++++ng+skvtwvehv
  XP_023919022.1 315 EVISSGmigshsGSLQLMYEELQVLSPLVPtREFYFLRYCQQIEQGSWAIVDVSYDISRDNQ-FASQYRSHRLPSGCLIQDMPNGYSKVTWVEHV 408
                     *************************************************************9.8******************************* PP

                     E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     + +++ p h  +r l++sgla+ga++w+atl+r ce+
  XP_023919022.1 409 EIEDKAPtHRFYRDLIHSGLAFGAQRWLATLKRMCER 445
                     ***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    
MEFGGGGGDG DHHDASSEGR RKKRYHRHTA HQIQRLEGMF KECPHPDEKQ RLQLSRELGL  60
APRQIKFWFQ NRRTQMKAQH ERADNCALRA ENDKIRCENI AIREALRNVI CPSCGGPPVT  120
EDSYFDEQKL RIENAQLKEE LDRVSSIAAK YIGRPISQLP PVQPIPISSL DLSMGSFGGQ  180
GISGPSLDLD LLPGSSSTLP SLPPFQPACL SDMDKSLMTD IAATAMEELL RLLQTNDPLW  240
MKSPTDGMDV LDLESYERIF PRGNTNLKNP HVRIEASRDS CVVIMNGLAL VDMFMDSNKW  300
VELFPTIVSM ARTLEVISSG MIGSHSGSLQ LMYEELQVLS PLVPTREFYF LRYCQQIEQG  360
SWAIVDVSYD ISRDNQFASQ YRSHRLPSGC LIQDMPNGYS KVTWVEHVEI EDKAPTHRFY  420
RDLIHSGLAF GAQRWLATLK RMCERFACLM VTGTSTTRDL EGVIPSADGK RSMMKLAQRM  480
INNFCSSIST SNGHRWTTLS GLNEVGVRVT VHKSTDPGQP NGVVLSAATT IWLPISPQNV  540
FNFFKDERTR PQWDVLSNGN AVQEVAHIAN GSHPGNCISV LRALNNGQNN MLILQESCMD  600
SSGSLIVYCP VDLPAINIAM SGEDPSYIPL LPSGFTISPD GRAEQGDGAS TSSSTHGHGR  660
SGGSLITVAF QILVSSLPSA KLNLESVTTV NNLIGTTVQQ IKAALNCPSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein