PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023918810.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family bHLH
Protein Properties Length: 378aa    MW: 42476.6 Da    PI: 8.783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023918810.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.2e-052723061655
                     HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     i +++  L++++ +      +K + a++L +A++YIk Lq
  XP_023918810.1 272 IGDRITALQQIVSPF-----GKTDTASVLFEAIQYIKFLQ 306
                     678999999999998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MSTGMFQPAC DYLKKLDNSW EFTNSTSFNN FEKHINGFND SVLDNERLNK LSNLVSTWSI  60
APPDPDVNRQ FDPQTCNISL SSSMDHYSQP DLCHMKHAFS DSTSCDLGTT RNCSLFPCYS  120
HDMKVENERR ETEAPVALLR RSFNNNGVGY QIGINSSLMG DNPRSYFYGM PNSSSCRSIK  180
SFADVISFSN RMGKPLMDIH APNNCFKSLN TSDYKKQGLQ TSMTRNNGKG QAIANEGKRK  240
RSEDGSESAL KKPKQESPTA SSVKVQAPKV KIGDRITALQ QIVSPFGKTD TASVLFEAIQ  300
YIKFLQEQVQ LLTNPYMKTN SHKDPWGGLD RKDKGDTKLD LRSRGLCLVP TSCTPQIYRE  360
NTGSDYWSTP TYRGSLYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238254KRKRSEDGSESALKKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.11e-62bHLH family protein