PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023918809.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 511aa MW: 56823.8 Da PI: 6.5056

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023918809.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.7e-05	405	439	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 i +++ L++++ + +K + a++L +A++YIk Lq XP_023918809.1 405 IGDRITALQQIVSPF-----GKTDTASVLFEAIQYIKFLQ 439 678999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MCEKERDMAE ECIESSVATS SSTPTNWWDI PGASSLPAWN NNPNSWHHQN PNSNSSCEED 60 VSISTSFTNA SNHSGLTVES SRRLAEPASS NDLIGEHASD NNLWSHVLLS VGSNGGLQNN 120 QDVEENFVDA LSSKSMSTGM FQPACDYLKK LDNSWEFTNS TSFNNFEKHI NGFNDSVLDN 180 ERLNKLSNLV STWSIAPPDP DVNRQFDPQT CNISLSSSMD HYSQPDLCHM KHAFSDSTSC 240 DLGTTRNCSL FPCYSHDMKV ENERRETEAP VALLRRSFNN NGVGYQIGIN SSLMGDNPRS 300 YFYGMPNSSS CRSIKSFADV ISFSNRMGKP LMDIHAPNNC FKSLNTSDYK KQGLQTSMTR 360 NNGKGQAIAN EGKRKRSEDG SESALKKPKQ ESPTASSVKA PKVKIGDRIT ALQQIVSPFG 420 KTDTASVLFE AIQYIKFLQE QVQLLTNPYM KTNSHKDPWG GLDRKDKGDT KLDLRSRGLC 480 LVPTSCTPQI YRENTGSDYW STPTYRGSLY R

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MCEKERDMAE ECIESSVATS SSTPTNWWDI PGASSLPAWN NNPNSWHHQN PNSNSSCEED  60
VSISTSFTNA SNHSGLTVES SRRLAEPASS NDLIGEHASD NNLWSHVLLS VGSNGGLQNN  120
QDVEENFVDA LSSKSMSTGM FQPACDYLKK LDNSWEFTNS TSFNNFEKHI NGFNDSVLDN  180
ERLNKLSNLV STWSIAPPDP DVNRQFDPQT CNISLSSSMD HYSQPDLCHM KHAFSDSTSC  240
DLGTTRNCSL FPCYSHDMKV ENERRETEAP VALLRRSFNN NGVGYQIGIN SSLMGDNPRS  300
YFYGMPNSSS CRSIKSFADV ISFSNRMGKP LMDIHAPNNC FKSLNTSDYK KQGLQTSMTR  360
NNGKGQAIAN EGKRKRSEDG SESALKKPKQ ESPTASSVKA PKVKIGDRIT ALQQIVSPFG  420
KTDTASVLFE AIQYIKFLQE QVQLLTNPYM KTNSHKDPWG GLDRKDKGDT KLDLRSRGLC  480
LVPTSCTPQI YRENTGSDYW STPTYRGSLY R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	373	389	KRKRSEDGSESALKKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	3e-70	bHLH family protein