PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023918803.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 591aa MW: 64467.1 Da PI: 9.3857

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023918803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3.1e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_023918803.1 73 FICEVCNKGFQREQNLQLHRRGH 95 89*******************88 PP
2	zf-C2H2	13.1	0.00028	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_023918803.1 149 WKCEKCSKRYAVQSDWKAHSKTC 171 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence
MAASSSSVPF FANIREEDQS QMKQQHSSTA PTSSAVQAAP PPQKKKRNQP GTPNPDAEVI 60 ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK RKVYLCPEPT 120 CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRRDSF ITHRAFCDAL AQESARQPPN MGSTIGSHLY GNSNMGLGLS QVGPQISSMQ 240 DQNNQSNDML RLGSGRPGQF DHLLPPGIGS SFRPPHPMPS SAMFMQDSSQ NYHQEHQSQQ 300 GLMSEKSFHG LMPFSDLQNS TTSNPPPAGT NLFNLGFMSN TSSNSSGNAN NNNSSLPSSA 360 MLMPNHFNNE NGSGGGSEGS NLFSNNMMAD QITSGVPSLY TTSVQSNTAM PHMSATALLQ 420 KAAQMGSTSS NNNTSSSLLR SFGSSSSKSE RQVVPGGLSS MFGENNENHF QDLMNSFTSG 480 NSSIFGSKFG TYDTNRTNLE LMDLEPNNKP NQNLSGGGGG SGSDRLTRDF LGVGQIVRSM 540 SGVSQRDQQQ HQQRQQQQQQ QQQHGLDMSS LDSDRNTAPS SQSFGGGGNF Q

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence

MAASSSSVPF FANIREEDQS QMKQQHSSTA PTSSAVQAAP PPQKKKRNQP GTPNPDAEVI  60
ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK RKVYLCPEPT  120
CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AQESARQPPN MGSTIGSHLY GNSNMGLGLS QVGPQISSMQ  240
DQNNQSNDML RLGSGRPGQF DHLLPPGIGS SFRPPHPMPS SAMFMQDSSQ NYHQEHQSQQ  300
GLMSEKSFHG LMPFSDLQNS TTSNPPPAGT NLFNLGFMSN TSSNSSGNAN NNNSSLPSSA  360
MLMPNHFNNE NGSGGGSEGS NLFSNNMMAD QITSGVPSLY TTSVQSNTAM PHMSATALLQ  420
KAAQMGSTSS NNNTSSSLLR SFGSSSSKSE RQVVPGGLSS MFGENNENHF QDLMNSFTSG  480
NSSIFGSKFG TYDTNRTNLE LMDLEPNNKP NQNLSGGGGG SGSDRLTRDF LGVGQIVRSM  540
SGVSQRDQQQ HQQRQQQQQQ QQQHGLDMSS LDSDRNTAPS SQSFGGGGNF Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-118	C2H2 family protein