PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023918167.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 836aa    MW: 92035.4 Da    PI: 6.3991
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023918167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598.1e-191775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_023918167.1 17 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP
2START179.71.7e-561613692205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W + +++++++ v+s++  g+++l 
  XP_023918167.1 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPTWFHGCRAVDVISVLSTAngGTIELL 254
                     789*******************************************************.8888888888*****************999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_023918167.1 255 YMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmpqVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 349
                     ********************************************999889********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++  ++kt++a+l+++++
  XP_023918167.1 350 ESSTLLAQKTTMAALRHLRQ 369
                     ***************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    
MMAVSSSCNK LQMDNGKYVR YTPEQVEALE RLYHDCPKPS SMRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENSYFRQH  120
TQNATLATTD TSCESVVTSG QHHLTPQHPP KDASPAGLIS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPTW FHGCRAVDVI  240
SVLSTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE DGSLVVCERS LNNTQNGPSM  300
PQVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTLLAQKTT  360
MAALRHLRQI SQEHSQPNVS GWGRRPAALR ALSQRLSKGF NEAVNGFTDE GWSMLESDGI  420
DDVTILVNSS PAKMMGGNLS YANGFQSMSN AVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADSSIDAYSA AAIKAGPCSL PGVRAGSFGG QVILPLAHTI EHEEFMEVIK LESMGHYRED  540
MMMAGDIFLL QLCSGVDENA VGNCAELIFA PIDASFSDDA PIIPSGFRII PLDSGIDSSS  600
PNRTLDLASA LEVGPTGNRA SGENSGQCGS TKSVMTIAFQ FAFEIHLQDN VAAMARQYIR  660
SIIASVQRVA LVLSPSHFGS HAGIRPPPGT PEAHTLARWI CQSYRCYLGV ELLKSEGSES  720
ILKTLWHHSD AVMCCSLKAL PVFTFANQAG LDMLETTLVA LQDITLEKIF DDNGKKTLCS  780
EFPQIMQQGF MCLQGGICLS SMGRPISYER AVAWKVLNEE ENAHCICFMF INWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein