PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023917028.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GRF

Protein Properties

Length: 602aa MW: 64960.3 Da PI: 8.4547

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023917028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	225	269	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_023917028.1 225 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 269 79****************************************985 PP
2	QLQ	52.2	1.9e-18	155	191	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy+ +n+ vP++Ll+++++ XP_023917028.1 155 GPFTPSQWIELEHQALIYKYITSNVAVPSNLLFPLKR 191 59********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MDFGVMGLED LVGPEGRGGS SKVSDPETKP KGLGSGLVKQ HKSGAGEDDW KSSKMAKSDS 60 LLAYKTMSLH QGTPLLRSNT LPISDNRQQE LMLSFSSVKS EVPFLSKDGG LVDKATHNSV 120 FPYYQRTPSA YSRNAAYGSG SLNSSMHGRF AGVRGPFTPS QWIELEHQAL IYKYITSNVA 180 VPSNLLFPLK RSLYPYGLSG SATGSSPYNS LGWGSFHLGF SGNTDPEPGR CRRTDGKKWR 240 CSRDAVADQK YCERHINRGR HRSRKPVEGQ TGHAAPGATN SKVVPGTSSL STVVIPSSGA 300 SNNLAMTQHQ FKNLQPGGAS NPSADAHVSR ENVCARMQDP RGLSTMSSTI SLKSNETTFT 360 ILKQGIPIEE SSQSEFGLVS TDSLLHPCHR GSYLNSKSYG SFLDFNDQEC QDQHPLRQFI 420 DELPKDQSNL SVMSWPEELK SDWTQLSMSI PMAPSDFSSS SSSPTQNKLS PLRLSREFEP 480 IQMNLGMSTD FSEPTQKQTN WIPISWGTSM GGPLGEVLTS TTSTARACNN SSALNLLTEG 540 WDGSPQLGSS PTGVLQKAPF GSLSNSSSGS SPRVENKRSR EGASLFEDVL GSTLASSSIP 600 SL

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MDFGVMGLED LVGPEGRGGS SKVSDPETKP KGLGSGLVKQ HKSGAGEDDW KSSKMAKSDS  60
LLAYKTMSLH QGTPLLRSNT LPISDNRQQE LMLSFSSVKS EVPFLSKDGG LVDKATHNSV  120
FPYYQRTPSA YSRNAAYGSG SLNSSMHGRF AGVRGPFTPS QWIELEHQAL IYKYITSNVA  180
VPSNLLFPLK RSLYPYGLSG SATGSSPYNS LGWGSFHLGF SGNTDPEPGR CRRTDGKKWR  240
CSRDAVADQK YCERHINRGR HRSRKPVEGQ TGHAAPGATN SKVVPGTSSL STVVIPSSGA  300
SNNLAMTQHQ FKNLQPGGAS NPSADAHVSR ENVCARMQDP RGLSTMSSTI SLKSNETTFT  360
ILKQGIPIEE SSQSEFGLVS TDSLLHPCHR GSYLNSKSYG SFLDFNDQEC QDQHPLRQFI  420
DELPKDQSNL SVMSWPEELK SDWTQLSMSI PMAPSDFSSS SSSPTQNKLS PLRLSREFEP  480
IQMNLGMSTD FSEPTQKQTN WIPISWGTSM GGPLGEVLTS TTSTARACNN SSALNLLTEG  540
WDGSPQLGSS PTGVLQKAPF GSLSNSSSGS SPRVENKRSR EGASLFEDVL GSTLASSSIP  600
SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-124	GRF family protein