PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023916795.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HD-ZIP

Protein Properties

Length: 357aa MW: 39584.9 Da PI: 7.3451

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023916795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.5	9.7e-18	180	234	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_023916795.1 180 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 234 778899***********************************************98 PP
2	HD-ZIP_I/II	127.3	6.4e-41	180	270	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_023916795.1 180 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 270 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MELALSLGDA PKPFTFLDKS PKLSNKDLGF CMGLGTSSGS RSSDEKTRET RESEEDDGDE 60 RRRVSSDPPL QLDLLPFTPV LRTHQPSQLR FPWLTDNLAS EPGSSDGPGR GLDVNRFPTV 120 ATAAEETDDG AALSSPNSTV SSFQMDFCVR NGGRSKRDLD VETERASSRA SDDEENGSTR 180 KKLRLSKEQS AFLEESFKEH STLNPKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV 240 DCEYLKRCCE TLTEENRRLQ KELQELRALK TSQPFYMQLP ATTLTMCPSC ERVATTTTTT 300 SGTNGNTNNT TTTTATTTNT NNTTNSAAMS LAKARLYPFS SQVQAHMQQA PAHQAAS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MELALSLGDA PKPFTFLDKS PKLSNKDLGF CMGLGTSSGS RSSDEKTRET RESEEDDGDE  60
RRRVSSDPPL QLDLLPFTPV LRTHQPSQLR FPWLTDNLAS EPGSSDGPGR GLDVNRFPTV  120
ATAAEETDDG AALSSPNSTV SSFQMDFCVR NGGRSKRDLD VETERASSRA SDDEENGSTR  180
KKLRLSKEQS AFLEESFKEH STLNPKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV  240
DCEYLKRCCE TLTEENRRLQ KELQELRALK TSQPFYMQLP ATTLTMCPSC ERVATTTTTT  300
SGTNGNTNNT TTTTATTTNT NNTTNSAAMS LAKARLYPFS SQVQAHMQQA PAHQAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	185	TRKKLRL
2	229	237	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-83	HD-ZIP family protein